当前解析结果
SmilChr06G000884| 统一新 Gene ID | SmilChr06G000884 |
|---|---|
| 名称 | SmilChr06G000884 |
| 描述 | U-box domain-containing protein 34 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 8389397 - 8394717 / - |
| NCBI Gene ID | LOC130988419 |
|---|---|
| GeneID | 130988419 |
| locus_tag | - |
| NCBI Name | LOC130988419 |
| 原始查询 | SmilChr06G000884 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | U-box domain-containing protein 34 |
| 产物 | U-box domain-containing protein 34 |
| Arabidopsis | AT5G57035 (AT5G57035)U-box domain-containing protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:835807] identity=52.8; qcov=1.03; evalue=0; confidence=high |
| Rice | Os06g0574200 (OsPUB47)- identity=47.2; qcov=1.05; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0004842 (ubiquitin-protein transferase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0016567 (protein ubiquitination) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF04564 (U-box); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988419 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057768224.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057768225.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057768224.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057768224.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057768224.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:8390023 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A14 |
Chr6:8390047 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C16,C52 |
Chr6:8390284 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B113,B12 |
Chr6:8391509 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
Chr6:8391589 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr6:8391625 |
A |
AAT |
2bp_insertion | frameshift_variant | 1 | C33 |
Chr6:8391625 |
A |
AAT |
2bp_insertion | CDS_variant | 1 | C33 |
Chr6:8391670 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C46 |
Chr6:8391727 |
TTC |
T |
2bp_deletion | frameshift_variant | 2 | B47,D10 |
Chr6:8391727 |
TTC |
T |
2bp_deletion | CDS_variant | 2 | B47,D10 |
Chr6:8392480 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:8392579 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B24,B68,C45 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057768224.1PF00069
Pkinase 382-586 aa
PF07714
PK_Tyr_Ser-Thr 385-638 aa
PF04564
U-box 665-731 aa
XP_057768225.1PF00069
Pkinase 319-523 aa
PF07714
PK_Tyr_Ser-Thr 322-575 aa
PF04564
U-box 602-668 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768224.1 |
Pfam | PF00069 |
Pkinase | Domain | 382 | 586 | 3e-38 | 132.4 | Protein kinase domain |
XP_057768224.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 385 | 638 | 1.2e-40 | 140.1 | Protein tyrosine and serine/threonine kinase |
XP_057768224.1 |
Pfam | PF04564 |
U-box | Domain | 665 | 731 | 2.2e-17 | 63.7 | U-box domain |
XP_057768225.1 |
Pfam | PF00069 |
Pkinase | Domain | 319 | 523 | 2.4e-38 | 132.8 | Protein kinase domain |
XP_057768225.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 322 | 575 | 1.1e-40 | 140.3 | Protein tyrosine and serine/threonine kinase |
XP_057768225.1 |
Pfam | PF04564 |
U-box | Domain | 602 | 668 | 2.1e-17 | 63.8 | U-box domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。