当前解析结果
SmilChr06G000887| 统一新 Gene ID | SmilChr06G000887 |
|---|---|
| 名称 | SmilChr06G000887 |
| 描述 | uncharacterized SmilChr06G000887 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 8405837 - 8406915 / + |
| NCBI Gene ID | LOC130990443 |
|---|---|
| GeneID | 130990443 |
| locus_tag | - |
| NCBI Name | LOC130990443 |
| 原始查询 | SmilChr06G000887 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os09g0268600; species=rice; confidence=low |
| 产物 | hit=Os09g0268600; species=rice; confidence=low |
| Arabidopsis | -- |
| Rice | Os09g0268600- identity=28.6; qcov=1.09; evalue=3.7e-29; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990443 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057770659.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057770659.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057770659.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057770659.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057770659.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:8405864 |
AG |
A |
1bp_deletion | frameshift_variant | 28 | A25,B110,B115,B12,B125,B129,B13,B135,B140,B22,B23,B34,B38,B39,B45,B55,B67,B91,C28,C39,C44,C45,C48,C76,C80,C85,D3,D6 |
Chr6:8405895 |
C |
CA |
1bp_insertion | frameshift_variant | 26 | B100,B118,B125,B14,B15,B23,B31,B36,B63,B64,B74,B90,B92,B94,C1,C17,C28,C3,C30,C33,C4,C43,C56,C7,C71,C87 |
Chr6:8405901 |
GA |
G |
1bp_deletion | frameshift_variant | 46 | A20,A4,A7,A8,B100,B114,B118,B12,B125,B126,B14,B15,B19,B23,B25,B31,B36,B53,B63,B64,B67,B73,B74,B90,B92,B94,C1,C15,C17,C28,C3,C30,C33,C34,C4,C43,C54,C56,C57,C7,C70,C71,C73,C78,C84,C87 |
Chr6:8405945 |
GT |
G |
1bp_deletion | frameshift_variant | 23 | A20,A4,A7,A8,B114,B118,B12,B126,B19,B25,B53,B63,B67,B73,C15,C33,C34,C54,C57,C70,C73,C78,C84 |
Chr6:8405974 |
TG |
T |
1bp_deletion | frameshift_variant | 3 | B136,C87,D3 |
Chr6:8405974 |
TG |
T |
1bp_deletion | CDS_variant | 3 | B136,C87,D3 |
Chr6:8406030 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B136,C24,C76,D1 |
Chr6:8406038 |
CTT |
C |
2bp_deletion | frameshift_variant | 5 | B110,B125,B45,C40,C76 |
Chr6:8406038 |
CTT |
C |
2bp_deletion | CDS_variant | 5 | B110,B125,B45,C40,C76 |
Chr6:8406050 |
C |
T |
EMS_canonical_SNV | stop_gained | 21 | A20,A4,A8,B114,B118,B12,B126,B19,B25,B53,B63,B67,B73,C15,C33,C34,C54,C57,C70,C78,C84 |
Chr6:8406101 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B40,C2,C77 |
Chr6:8406107 |
A |
AGG |
2bp_insertion | frameshift_variant | 5 | B34,B38,B39,B91,D6 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。