Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000896`

染色体: Chr06 坐标: 8466820-8472785 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000896`
名称	SmilChr06G000896
描述	THO complex subunit 6
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	8466820 - 8472785 / `-`

ID 对照

NCBI Gene ID	`LOC130988429`
GeneID	`130988429`
locus_tag	`-`
NCBI Name	`LOC130988429`
原始查询	`SmilChr06G000896`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	THO complex subunit 6
产物	THO complex subunit 6
Arabidopsis	`AT2G19430` (DWA1) DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1 [Source:NCBI gene (formerly Entrezgene);Acc:816462] identity=57.8; qcov=0.993; evalue=2.05e-123; confidence=high
Rice	`Os09g0363600` (OsWD40-171) - identity=50.8; qcov=0.884; evalue=2.84e-84; confidence=high
GO	GO:0000346 (transcription export complex); GO:0000347 (THO complex); GO:0005515 (protein binding); GO:0006406 (mRNA export from nucleus)
KEGG	smil03013 (Nucleocytoplasmic transport - Salvia miltiorrhiza (redroot sage)); smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00400 (WD40)
InterPro	-
eggNOG	-
NR	GeneID:130988429

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057768242.1`
2	Nucleus	细胞核	0.60000	`XP_057768242.1`
3	Cytoplasm	细胞质	0.60000	`XP_057768242.1`
4	Chromosome	染色体	0.00000	`XP_057768242.1`
5	Centromere	着丝粒	0.00000	`XP_057768242.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:8468275`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr6:8468833`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:8472461`	`GGC`	`G`	2bp_deletion	frameshift_variant	1	C46
`Chr6:8472461`	`GGC`	`G`	2bp_deletion	CDS_variant	1	C46

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768242.1

368 aa

184

368

WD40

PF00400 WD40 85-119 aa PF00400 WD40 192-227 aa PF00400 WD40 249-275 aa

XP_057768243.1

303 aa

152

303

WD40

PF00400 WD40 85-119 aa PF00400 WD40 192-227 aa PF00400 WD40 249-275 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768242.1`	Pfam	`PF00400`	WD40	Repeat	85	119	8e-19	68.0	WD domain, G-beta repeat
`XP_057768242.1`	Pfam	`PF00400`	WD40	Repeat	192	227	8e-19	68.0	WD domain, G-beta repeat
`XP_057768242.1`	Pfam	`PF00400`	WD40	Repeat	249	275	8e-19	68.0	WD domain, G-beta repeat
`XP_057768243.1`	Pfam	`PF00400`	WD40	Repeat	85	119	2.3e-20	72.8	WD domain, G-beta repeat
`XP_057768243.1`	Pfam	`PF00400`	WD40	Repeat	192	227	2.3e-20	72.8	WD domain, G-beta repeat
`XP_057768243.1`	Pfam	`PF00400`	WD40	Repeat	249	275	2.3e-20	72.8	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057912259.1
AGGATGAGAATAAGCAATAGCAACTAGCAAGACAACCGTGAAATGTAGCGCGCCATTTCTCCATCTGAATATTTCTGCAACTATCTCAGTCCAACTGTGTGTGAAGCAGAGGAGGATAGAAGAAATGGGAGTGGCACAACAAATGGATTGCAGAAATTGGGAGGAAGATTCCTACAGAGACGCCATTTTGCAAGATAGAGAAACCCTCTCTCGGACCGTTTTCCGGACCGCCTACGCTCCAAACCCTAATCCCAATCCCA...

XM_057912260.1
AAGAGGATGAGAATAAGCAATAGCAACTAGCAAGACAACCGTGAAATGTAGCGCGCCATTTCTCCATCTGAATATTTCTGCAACTATCTCAGTCCAACTGTGTGTGAAGCAGAGGAGGATAGAAGAAATGGGAGTGGCACAACAAATGGATTGCAGAAATTGGGAGGAAGATTCCTACAGAGACGCCATTTTGCAAGATAGAGAAACCCTCTCTCGGACCGTTTTCCGGACCGCCTACGCTCCAAACCCTAATCCCAATC...

CDS

2 records

下载 CDS FASTA

LOC130988429
ATGGGAGTGGCACAACAAATGGATTGCAGAAATTGGGAGGAAGATTCCTACAGAGACGCCATTTTGCAAGATAGAGAAACCCTCTCTCGGACCGTTTTCCGGACCGCCTACGCTCCAAACCCTAATCCCAATCCCAATTCCGACCATGTCGTCACCGCCTCCAGCGACGGCTCCGTCGCCGCTTACTCCATTTTCGCCTGCCTCGAGATGGGCTGCGGACGCTCGAGAGATCGAAATTGGTTAGCTGCAGAGCCAGAGTT...

Protein

2 records

下载 Protein FASTA

XP_057768242.1
MGVAQQMDCRNWEEDSYRDAILQDRETLSRTVFRTAYAPNPNPNPNSDHVVTASSDGSVAAYSIFACLEMGCGRSRDRNWLAAEPEFVIRGHDGPAYDVKFYDDSLLLSCGDDGRIRGWKWKEILESMESERGAKMKPVFDLVNPQHKGPWGALSPIPENNAIAVDSQSGSIYAAAGDSCAYCWDMEKCQVKMVFKGHSNYLHCIVSCNSSNQIITGSEDGTARIWDCKSGKCIQVINPEKQGTSASFPCVSCIALDSSE...

XP_057768243.1
MGVAQQMDCRNWEEDSYRDAILQDRETLSRTVFRTAYAPNPNPNPNSDHVVTASSDGSVAAYSIFACLEMGCGRSRDRNWLAAEPEFVIRGHDGPAYDVKFYDDSLLLSCGDDGRIRGWKWKEILESMESERGAKMKPVFDLVNPQHKGPWGALSPIPENNAIAVDSQSGSIYAAAGDSCAYCWDMEKCQVKMVFKGHSNYLHCIVSCNSSNQIITGSEDGTARIWDCKSGKCIQVINPEKQGTSASFPCVSCIALDSSE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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