Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000902`

染色体: Chr06 坐标: 8497991-8502425 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000902`
名称	SmilChr06G000902
描述	uncharacterized SmilChr06G000902
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	8497991 - 8502425 / `+`

ID 对照

NCBI Gene ID	`LOC130988437`
GeneID	`130988437`
locus_tag	`-`
NCBI Name	`LOC130988437`
原始查询	`SmilChr06G000902`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述	translation initiation factor 3 subunit I [Source:NCBI gene (formerly Entrezgene);Acc:841909]; symbol=AT1G54680; hit=AT1G54680; species=arabidopsis; confidence=medium
产物	translation initiation factor 3 subunit I [Source:NCBI gene (formerly Entrezgene);Acc:841909]; symbol=AT1G54680; hit=AT1G54680; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G54680` (AT1G54680) translation initiation factor 3 subunit I [Source:NCBI gene (formerly Entrezgene);Acc:841909] identity=39.6; qcov=0.858; evalue=9.11e-43; confidence=medium
Rice	`Os01g0382700` - identity=30.6; qcov=0.98; evalue=4.7e-23; confidence=low
GO	GO:0004176 (ATP-dependent peptidase activity); GO:0004222 (metalloendopeptidase activity); GO:0005524 (ATP binding); GO:0006508 (proteolysis)
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:130988437

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057768257.1`
2	Chloroplast	叶绿体	0.60000	`XP_057768253.1`
3	Nucleus	细胞核	0.00000	`XP_057768253.1`
4	Chromosome	染色体	0.00000	`XP_057768253.1`
5	Centromere	着丝粒	0.00000	`XP_057768253.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:8498193`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B15,B27,B57,D7
`Chr6:8498246`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A25,B110,B121,B60,B62
`Chr6:8498273`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C19
`Chr6:8499442`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B71,C24,C62
`Chr6:8499462`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B35,C85
`Chr6:8500709`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B103,B75
`Chr6:8500777`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A16,B19,B60,B91
`Chr6:8502003`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B70,B71,C24
`Chr6:8502167`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr6:8502309`	`TG`	`T`	1bp_deletion	frameshift_variant	31	A11,A2,A8,B102,B105,B107,B128,B132,B133,B18,B20,B41,B44,B45,B46,B66,B80,B87,B94,C28,C33,C39,C4,C42,C48,C58,C69,C76,C83,C87,D8
`Chr6:8502324`	`T`	`TGC`	2bp_insertion	frameshift_variant	44	A19,A20,A21,A8,B105,B109,B124,B128,B130,B132,B133,B135,B14,B18,B19,B24,B30,B38,B39,B41,B44,B45,B51,B60,B62,B74,B78,B91,C20,C25,C28,C38,C39,C41,C42,C49,C6,C68,C69,C76,C87,D10,D5,D8

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057912270.1
AATTGTGTTAGTATTTTTATTTATTTATTTTAGCCACACAGTGTGGACACAGGATAAGGGGGGACGAAACGATGTCGTTTAGGGCACCGTTATATGAGCTTCCACCGCTCTGTAGTTTCTACCTACGCAATCGATGGAGGTGCGTATTTTGACGGTGAAAGAGGTTTCATCAGCGCCGGGGACCGGAATTCAGAAGCATGGTGTATTGGCGGCGCAGGTGAAGGAAGGAAACGCGGCGGTACGGCGTCGCAGAGCGTTGA...

XM_057912274.1
AATTGTGTTAGTATTTTTATTTATTTATTTTAGCCACACAGTGTGGACACAGGATAAGGGGGGACGAAACGATGTCGTTTAGGGCACCGTTATATGAGCTTCCACCGCTCTGTAGTTTCTACCTACGCAATCGATGGAGGTGCGTATTTTGACGGTGAAAGAGGTTTCATCAGCGCCGGGGACCGGAATTCAGAAGCATGGTGTATTGGCGGCGCAGGTGAAGGAAGGAAACGCGGCGGTACGGCGTCGCAGAGCGTTGA...

CDS

6 records

下载 CDS FASTA

LOC130988437
ATGGAGGTGCGTATTTTGACGGTGAAAGAGGTTTCATCAGCGCCGGGGACCGGAATTCAGAAGCATGGTGTATTGGCGGCGCAGGTGAAGGAAGGAAACGCGGCGGTACGGCGTCGCAGAGCGTTGATGAGGTTGGACAGGGCATTGGAGAAGGGTAATTGCAAGGCGGTGCTGTCTCTGATGAAGCAGTTCAAGGCTCATCCTGCCGGCTTCCTCCGCGGCTTCGGCGCCGCCGCTGCCCCAAAGGTCTCTGGAAGAGT...

Protein

6 records

下载 Protein FASTA

XP_057768253.1
MEVRILTVKEVSSAPGTGIQKHGVLAAQVKEGNAAVRRRRALMRLDRALEKGNCKAVLSLMKQFKAHPAGFLRGFGAAAAPKVSGRVSSFELARRSGISSLQIVIDAILHSLKRSLDFQLQEEEAEILPKDFGKTTAADSHNSIYEDHLMCMQQYNVFQHEAGHFLVGYLLGVLPRRYKVPSVEDLLRDKFARGNVEFVGFEFLREVGIDPVSNRNFSKGKLNKETLKKFSCVTLGGLVAEHLVFGYSELLHSDVEKLDR...

XP_057768254.1
MEVRILTVKEVSSAPGTGIQKHGVLAAQVKEGNAAVRRRRALMRLDRALEKGNCKAVLSLMKQFKAHPAGFLRGFGAAAAPKVSGRVSSFELARRSGISSLQIVIDAILHSLKRSLDFQLQEEEAEILPKDFGKTTAADSHNSIYEDHLMCMQHEAGHFLVGYLLGVLPRRYKVPSVEDLLRDKFARGNVEFVGFEFLREVGIDPVSNRNFSKGKLNKETLKKFSCVTLGGLVAEHLVFGYSELLHSDVEKLDRVHKWLG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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