当前解析结果
SmilChr06G000905| 统一新 Gene ID | SmilChr06G000905 |
|---|---|
| 名称 | SmilChr06G000905 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 8537803 - 8539734 / - |
| NCBI Gene ID | LOC130988439 |
|---|---|
| GeneID | 130988439 |
| locus_tag | - |
| NCBI Name | LOC130988439 |
| 原始查询 | SmilChr06G000905 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330 |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330 |
| Arabidopsis | AT1G11330 (AT1G11330)S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837675] identity=47.9; qcov=0.971; evalue=1.01e-73; confidence=high |
| Rice | Os07g0551300 (OSJNBb0041B22.109)- identity=43; qcov=1.01; evalue=3.82e-62; confidence=medium |
| GO | GO:0004713 (protein tyrosine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988439 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057768260.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057768260.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057768260.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057768260.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057768260.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:8538608 |
G |
A |
EMS_canonical_SNV | stop_gained | 9 | A19,A24,B130,B40,B77,C13,C16,C65,C77 |
Chr6:8538609 |
TG |
T |
1bp_deletion | frameshift_variant | 171 | A11,A13,A16,A18,A19,A2,A21,A22,A24,A5,A6,A7,A8,A9,B1,B100,B102,B103,B104,B105,B106,B108,B11,B111,B112,B113,B114,B115,B118,B12,B120,B124,B125,B127,B128,B129,B130,B131,B132,B133,B134,B135,B136,B137,B14,B140,B17,B18,B19,B2,B20,B22,B25,B26,B27,B3,B32,B33,B34,B36,B38,B39,B40,B41,B42,B43,B44,B45,B46,B48,B49,B50,B51,B53,B55,B56,B57,B59,B60,B61,B63,B65,B66,B7,B70,B71,B72,B73,B74,B75,B76,B77,B79,B80,B81,B82,B83,B84,B85,B87,B90,B91,B92,B94,B96,B97,B98,B99,C1,C11,C12,C13,C14,C16,C17,C20,C21,C22,C23,C25,C27,C28,C29,C30,C32,C33,C35,C38,C39,C4,C40,C41,C43,C46,C47,C48,C49,C52,C53,C54,C55,C56,C58,C61,C62,C64,C65,C66,C68,C69,C72,C73,C75,C76,C77,C78,C79,C8,C83,C85,C86,C87,C9,D1,D10,D11,D2,D5,D6,D7,D8 |
Chr6:8538610 |
G |
GA |
1bp_insertion | frameshift_variant | 171 | A11,A13,A16,A18,A19,A2,A21,A22,A24,A5,A6,A7,A8,A9,B1,B100,B102,B103,B104,B105,B106,B108,B11,B111,B112,B113,B114,B115,B118,B12,B120,B124,B125,B127,B128,B129,B130,B131,B132,B133,B134,B135,B136,B137,B14,B140,B17,B18,B19,B2,B20,B22,B25,B26,B27,B3,B32,B33,B34,B36,B38,B39,B40,B41,B42,B43,B44,B45,B46,B48,B49,B50,B51,B53,B55,B56,B57,B59,B60,B61,B63,B65,B66,B7,B70,B71,B72,B73,B74,B75,B76,B77,B79,B80,B81,B82,B83,B84,B85,B87,B90,B91,B92,B94,B96,B97,B98,B99,C1,C11,C12,C13,C14,C16,C17,C20,C21,C22,C23,C25,C27,C28,C29,C30,C32,C33,C35,C38,C39,C4,C40,C41,C43,C46,C47,C48,C49,C52,C53,C54,C55,C56,C58,C61,C62,C64,C65,C66,C68,C69,C72,C73,C75,C76,C77,C78,C79,C8,C83,C85,C86,C87,C9,D1,D10,D11,D2,D5,D6,D7,D8 |
Chr6:8538885 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B78 |
Chr6:8538885 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr6:8538902 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr6:8538974 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A14 |
Chr6:8539124 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B80,C6,C67 |
Chr6:8539130 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B62,B78 |
Chr6:8539138 |
TC |
T |
1bp_deletion | frameshift_variant | 13 | A23,A5,A9,B1,B113,B115,B121,B30,B38,B45,C35,C43,C5 |
Chr6:8539180 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B93,C2,C32,C68 |
Chr6:8539417 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B61 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057768260.1PF08276
PAN_2 3-52 aa
PF00069
Pkinase 154-239 aa
PF07714
PK_Tyr_Ser-Thr 157-242 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768260.1 |
Pfam | PF08276 |
PAN_2 | Domain | 3 | 52 | 1.2e-13 | 51.6 | PAN-like domain |
XP_057768260.1 |
Pfam | PF00069 |
Pkinase | Domain | 154 | 239 | 5.5e-14 | 52.9 | Protein kinase domain |
XP_057768260.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 157 | 242 | 1e-16 | 61.8 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。