当前解析结果
SmilChr06G000917| 统一新 Gene ID | SmilChr06G000917 |
|---|---|
| 名称 | SmilChr06G000917 |
| 描述 | uncharacterized SmilChr06G000917 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 8716368 - 8718974 / + |
| NCBI Gene ID | LOC130988451 |
|---|---|
| GeneID | 130988451 |
| locus_tag | - |
| NCBI Name | LOC130988451 |
| 原始查询 | SmilChr06G000917 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Alkaline-phosphatase-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:829089]; symbol=AT4G29680; hit=AT4G29680; species=arabidopsis; confidence=high |
| 产物 | Alkaline-phosphatase-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:829089]; symbol=AT4G29680; hit=AT4G29680; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G29680 (AT4G29680)Alkaline-phosphatase-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:829089] identity=65.7; qcov=1.02; evalue=0; confidence=high |
| Rice | Os01g0196600- identity=69.5; qcov=0.817; evalue=0; confidence=high |
| GO | GO:0005773 (vacuole) |
| KEGG | - |
| Pfam | PF01663 (Phosphodiest) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988451 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.80000 | XP_057768291.1 |
| 2 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057768291.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057768291.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057768291.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057768291.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:8717130 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:8717296 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr6:8717406 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C12,C14 |
Chr6:8717433 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:8717451 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A25,B110,B60,B62 |
Chr6:8717529 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A3,B54,C23,C7,C81 |
Chr6:8717847 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B104,B65,B91,C46 |
Chr6:8717977 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | C15 |
Chr6:8717977 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr6:8718019 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B13,C22 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057768291.1PF01663
Phosphodiest 99-421 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768291.1 |
Pfam | PF01663 |
Phosphodiest | Family | 99 | 421 | 1.4e-105 | 354.4 | Type I phosphodiesterase / nucleotide pyrophosphatase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。