当前解析结果
SmilChr06G000928| 统一新 Gene ID | SmilChr06G000928 |
|---|---|
| 名称 | SmilChr06G000928 |
| 描述 | inactive protein kinase SELMODRAFT_444075-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 8816608 - 8820298 / - |
| NCBI Gene ID | LOC130988463 |
|---|---|
| GeneID | 130988463 |
| locus_tag | - |
| NCBI Name | LOC130988463 |
| 原始查询 | SmilChr06G000928 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | inactive protein kinase SELMODRAFT_444075-like |
| 产物 | inactive protein kinase SELMODRAFT_444075-like |
| Arabidopsis | AT3G13690 (AT3G13690)kinase with adenine nucleotide alpha hydrolases-like domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:820578] identity=57; qcov=1.06; evalue=0; confidence=high |
| Rice | Os01g0602800 (OsRLCK42)- identity=57.5; qcov=1.03; evalue=0; confidence=high |
| GO | GO:0004713 (protein tyrosine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988463 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057768305.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057768305.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057768305.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057768305.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057768305.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:8816919 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B27,B57 |
Chr6:8817675 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:8817936 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B5,B88,C11,C17 |
Chr6:8817960 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B37,C76 |
Chr6:8817972 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
Chr6:8818082 |
G |
A |
EMS_canonical_SNV | stop_gained | 112 | A1,A10,A11,A16,A2,A20,A22,A24,A25,A3,A4,A6,A9,B10,B101,B105,B106,B107,B112,B119,B122,B126,B131,B134,B136,B137,B16,B18,B20,B22,B28,B34,B36,B4,B40,B42,B45,B47,B48,B49,B52,B55,B56,B6,B60,B62,B65,B68,B71,B74,B75,B76,B8,B81,B83,B84,B85,B87,B90,B91,B94,B95,B96,B99,C12,C17,C19,C20,C21,C22,C24,C26,C27,C29,C31,C32,C35,C37,C38,C43,C45,C46,C48,C5,C51,C52,C53,C55,C56,C57,C58,C6,C60,C61,C64,C65,C66,C68,C70,C71,C73,C74,C77,C79,C80,C81,C84,C85,C87,D4,D5,D9 |
Chr6:8818119 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B61,B72,C39,C56 |
Chr6:8818136 |
AT |
A |
1bp_deletion | frameshift_variant | 64 | A1,A10,A14,A16,A2,A20,A24,A5,A6,B10,B101,B107,B122,B132,B134,B135,B17,B18,B28,B4,B40,B41,B42,B45,B46,B5,B53,B56,B60,B62,B65,B68,B72,B8,B81,B84,B85,B95,B96,C15,C17,C19,C21,C24,C27,C30,C32,C35,C37,C43,C46,C5,C52,C56,C6,C60,C66,C71,C74,C79,C80,C81,C87,D4 |
Chr6:8818164 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
Chr6:8818166 |
GA |
G |
1bp_deletion | frameshift_variant | 21 | A6,B10,B101,B107,B122,B131,B17,B41,B42,B5,B60,B8,B81,C21,C27,C32,C5,C56,C6,C66,C80 |
Chr6:8818175 |
CCG |
C |
2bp_deletion | frameshift_variant | 11 | A6,B101,B107,B122,B17,B42,B65,B81,C27,C32,C5 |
Chr6:8818257 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057768305.1PF00069
Pkinase 358-622 aa
PF07714
PK_Tyr_Ser-Thr 359-623 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768305.1 |
Pfam | PF00069 |
Pkinase | Domain | 358 | 622 | 5.5e-41 | 141.4 | Protein kinase domain |
XP_057768305.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 359 | 623 | 1.7e-39 | 136.4 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。