Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000945`

染色体: Chr06 坐标: 9058494-9063333 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000945`
名称	SmilChr06G000945
描述	cation-dependent phenylpropanoid and flavonoid 8-O-methyltransferase 1-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	9058494 - 9063333 / `+`

ID 对照

NCBI Gene ID	`LOC130988489`
GeneID	`130988489`
locus_tag	`-`
NCBI Name	`LOC130988489`
原始查询	`SmilChr06G000945`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cation-dependent phenylpropanoid and flavonoid 8-O-methyltransferase 1-like
产物	cation-dependent phenylpropanoid and flavonoid 8-O-methyltransferase 1-like
Arabidopsis	`AT4G26220` (AT4G26220) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828728] identity=66.1; qcov=0.937; evalue=4.43e-110; confidence=high
Rice	`Os06g0165800` (ROMT-16) - identity=57.7; qcov=0.95; evalue=1.59e-93; confidence=high
GO	GO:0008171 (O-methyltransferase activity); GO:0008757 (S-adenosylmethionine-dependent methyltransferase activity)
KEGG	smil00940 (Phenylpropanoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00941 (Flavonoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00945 (Stilbenoid, diarylheptanoid and gingerol biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01596 (Methyltransf_3); PF13578 (Methyltransf_24)
InterPro	-
eggNOG	-
NR	GeneID:130988489

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057768337.1`
2	Nucleus	细胞核	0.40000	`XP_057768337.1`
3	Cytosol	细胞质基质	0.40000	`XP_057768337.1`
4	Chromosome	染色体	0.00000	`XP_057768337.1`
5	Centromere	着丝粒	0.00000	`XP_057768337.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:9059071`	`C`	`CA`	1bp_insertion	frameshift_variant	1	A14
`Chr6:9059071`	`C`	`CA`	1bp_insertion	CDS_variant	1	A14
`Chr6:9059091`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr6:9059208`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B57,C6
`Chr6:9063062`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B73,B90

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768337.1

239 aa

120

239

Methyltransf_3

Methyltransf_24

PF01596 Methyltransf_3 30-238 aa PF13578 Methyltransf_24 78-184 aa

XP_057768339.1

239 aa

120

239

Methyltransf_3

Methyltransf_24

PF01596 Methyltransf_3 30-238 aa PF13578 Methyltransf_24 78-184 aa

XP_057768340.1

239 aa

120

239

Methyltransf_3

Methyltransf_24

PF01596 Methyltransf_3 30-238 aa PF13578 Methyltransf_24 78-184 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768337.1`	Pfam	`PF01596`	Methyltransf_3	Domain	30	238	1.6e-76	256.9	O-methyltransferase
`XP_057768337.1`	Pfam	`PF13578`	Methyltransf_24	Domain	78	184	4.1e-11	44.4	Methyltransferase domain
`XP_057768339.1`	Pfam	`PF01596`	Methyltransf_3	Domain	30	238	1.6e-76	256.9	O-methyltransferase
`XP_057768339.1`	Pfam	`PF13578`	Methyltransf_24	Domain	78	184	4.1e-11	44.4	Methyltransferase domain
`XP_057768340.1`	Pfam	`PF01596`	Methyltransf_3	Domain	30	238	1.6e-76	256.9	O-methyltransferase
`XP_057768340.1`	Pfam	`PF13578`	Methyltransf_24	Domain	78	184	4.1e-11	44.4	Methyltransferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057912354.1
GTTTTATTAAATAGAGTAGGTGAATGGAATAGTATCTGTGTGGCTTCAAATACAATTAATTTTGAGTTGGAGCTTCCATCTCAAATTTTCACGCACAGAGGATTTGAGTTGTTAGGAATTAGTGATGGAGACCAAAGCTGTGATCAATACTAGTACTCCTAAACAAAAAGGCTTGTTGCAAACCGCAGAGTTGTACAAGTATATAATGGGTACTAGCGTGTATCCACGCGAACAACAATGTCTCAAGGAGCTCAGAGCTA...

XM_057912357.1
CTTCCATCTCAAATTTTCACGCACAGAGGAATTAGTGATGGAGACCAAAGCTGTGATCAATACTAGTACTCCTAAACAAAAAGGCTTGTTGCAAACCGCAGAGTTGTACAAGTATATAATGGGTACTAGCGTGTATCCACGCGAACAACAATGTCTCAAGGAGCTCAGAGCTATCACATCCACTCATCCAAGGGCTGTGATGGGTACGGCACCTGATGTGGGACAGTTTATGGCCTTGCTTTTAAAGGCAATCAACGCGA...

CDS

3 records

下载 CDS FASTA

LOC130988489
ATGGAGACCAAAGCTGTGATCAATACTAGTACTCCTAAACAAAAAGGCTTGTTGCAAACCGCAGAGTTGTACAAGTATATAATGGGTACTAGCGTGTATCCACGCGAACAACAATGTCTCAAGGAGCTCAGAGCTATCACATCCACTCATCCAAGGGCTGTGATGGGTACGGCACCTGATGTGGGACAGTTTATGGCCTTGCTTTTAAAGGCAATCAACGCGAAAAAGACGATTGAAATTGGAGTTTTTACTGGATATTC...

Protein

3 records

下载 Protein FASTA

XP_057768337.1
METKAVINTSTPKQKGLLQTAELYKYIMGTSVYPREQQCLKELRAITSTHPRAVMGTAPDVGQFMALLLKAINAKKTIEIGVFTGYSLLVTALTIPDDGKITAIDMNRSSYLIGLPIIEKAGVEHKINFIESEALPALDQLLKDPENKGTFDFAFVDADKADYANYHERVLELLKPGGIAVYDNTLWQGTVAMDEGSVPESKLVTRKDSIGFNKYIAGDARVQISQVPLGDGITICRRN

XP_057768339.1
METKAVINTSTPKQKGLLQTAELYKYIMGTSVYPREQQCLKELRAITSTHPRAVMGTAPDVGQFMALLLKAINAKKTIEIGVFTGYSLLVTALTIPDDGKITAIDMNRSSYLIGLPIIEKAGVEHKINFIESEALPALDQLLKDPENKGTFDFAFVDADKADYANYHERVLELLKPGGIAVYDNTLWQGTVAMDEGSVPESKLVTRKDSIGFNKYIAGDARVQISQVPLGDGITICRRN

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器