Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr06G000951`

Chromosome: Chr06 Coordinates: 9155814-9158866 Strand: - Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr06G000951`
Name	SmilChr06G000951
Description	uncharacterized SmilChr06G000951
Chromosome / SeqID	Chr06 / NC_080392.1
Coordinates and Strand	9155814 - 9158866 / `-`

ID Mapping

NCBI Gene ID	`LOC130988499`
GeneID	`130988499`
locus_tag	`-`
NCBI Name	`LOC130988499`
Original query	`SmilChr06G000951`

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Functional Annotation

Source	GFF basic annotation; Arabidopsis/Rice homolog
Description	histone-lysine N-methyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:828730]; symbol=AT4G26240; hit=AT4G26240; species=arabidopsis; confidence=high
Product	histone-lysine N-methyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:828730]; symbol=AT4G26240; hit=AT4G26240; species=arabidopsis; confidence=high
Arabidopsis	`AT4G26240` (AT4G26240) histone-lysine N-methyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:828730] identity=51; qcov=1.18; evalue=5.54e-58; confidence=high
Rice	`Os01g0559300` - identity=40.4; qcov=0.988; evalue=1.99e-39; confidence=medium
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:130988499

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Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057768358.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057768358.1`
3	Golgi apparatus	高尔基体	0.40000	`XP_057768358.1`
4	Nucleus	细胞核	0.00000	`XP_057768359.1`
5	Chromosome	染色体	0.00000	`XP_057768359.1`

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EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr6:9158183`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D3

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Predicted Protein Domains

This gene has no available Pfam domain hit in the current release.

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cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

3 records

Download cDNA FASTA

XM_057912378.1
TTAGCTTGATAAATTTCATGAGCAAAGAAATAAGGCAATTACAAAAAACTCCGCCACGTTTCACTCCTAAATAAAATACTTATCTCGAAAAAGAAATAATTCAGAGGAATTATGCAGAAGCTCGCGAGAAAATTGAGAAAATCGGCGGGGGATGTGGATGACGACGACGACTACTCTCTTCCAACTCGGGACGACTCCCGTCCGATTGACGTACAAGAGCAAGAGGAATTAGTCCGGTCCCTGGAGAAGATTCACGCCCA...

XM_057912376.1
TTAGCTTGATAAATTTCATGAGCAAAGAAATAAGGCAATTACAAAAAACTCCGCCACGTTTCACTCCTAAATAAAATACTTATCTCGAAAAAGAAATAATTCAGAGGAATTATGCAGAAGCTCGCGAGAAAATTGAGAAAATCGGCGGGGGATGTGGATGACGACGACGACTACTCTCTTCCAACTCGGGACGACTCCCGTCCGATTGACGTACAAGAGCAAGAGGAATTAGTCCGGTCCCTGGAGAAGATTCACGCCCA...

CDS

3 records

Download CDS FASTA

LOC130988499
ATGCAGAAGCTCGCGAGAAAATTGAGAAAATCGGCGGGGGATGTGGATGACGACGACGACTACTCTCTTCCAACTCGGGACGACTCCCGTCCGATTGACGTACAAGAGCAAGAGGAATTAGTCCGGTCCCTGGAGAAGATTCACGCCCAACAGTCTCTTATATGGAGGTATCATGCATACTTCATGTATGAGATCGACTCAGGGAGCATTGTAGCTGCAGAGCTGGTAGCTGTTCTCATATGTTTAATGATCATCACTGG...

LOC130988499
ATGCAGAAGCTCGCGAGAAAATTGAGAAAATCGGCGGGGGATGTGGATGACGACGACGACTACTCTCTTCCAACTCGGGACGACTCCCGTCCGATTGACGTACAAGAGCAAGAGGAATTAGTCCGGTCCCTGGAGAAGATTCACGCCCAACAGTCTCTTATATGGAGGCAGTATCATGCATACTTCATGTATGAGATCGACTCAGGGAGCATTGTAGCTGCAGAGCTGGTAGCTGTTCTCATATGTTTAATGATCATCAC...

Protein

3 records

Download Protein FASTA

XP_057768358.1
MQKLARKLRKSAGDVDDDDDYSLPTRDDSRPIDVQEQEELVRSLEKIHAQQSLIWRSVFAGLVSCYVIFLVYSMYQQAFSPWDLQYHAYFMYEIDSGSIVAAELVAVLICLMIITGLMHNSKRHHLWLWYSFVPGTLLAIFWLHHMLRLAKFRWEIMWVPLGPLCGAGVCLYVDNLLNGSSEEVRKLRGYMYAYKAY

XP_057768359.1
MQKLARKLRKSAGDVDDDDDYSLPTRDDSRPIDVQEQEELVRSLEKIHAQQSLIWRQYHAYFMYEIDSGSIVAAELVAVLICLMIITGLMHNSKRHHLWLWYSFVPGTLLAIFWLHHMLRLAKFRWEIMWVPLGPLCGAGVCLYVDNLLNGSSEEVRKLRGYMYAYKAY

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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