Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G000952

染色体: Chr06 坐标: 9169814-9173371 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G000952
名称SmilChr06G000952
描述vacuolar protein sorting-associated protein 32 homolog 2-like
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向9169814 - 9173371 / +

ID 对照

NCBI Gene IDLOC130988498
GeneID130988498
locus_tag-
NCBI NameLOC130988498
原始查询SmilChr06G000952

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述vacuolar protein sorting-associated protein 32 homolog 2-like
产物vacuolar protein sorting-associated protein 32 homolog 2-like
ArabidopsisAT4G29160 (SNF7.1)
SNF7 family protein [Source:NCBI gene (formerly Entrezgene);Acc:829037]
identity=81.4; qcov=1; evalue=2.49e-105; confidence=high
RiceOs06g0608500 (OsSNF7)
-
identity=70.5; qcov=1; evalue=4.61e-94; confidence=high
GOGO:0000815 (ESCRT III complex); GO:0005771 (multivesicular body); GO:0006900 (vesicle budding from membrane); GO:0009898 (cytoplasmic side of plasma membrane); GO:0032511 (late endosome to vacuole transport via multivesicular body sorting pathway)
KEGGsmil03250 (Viral life cycle - HIV-1 - Salvia miltiorrhiza (redroot sage)); smil03272 (Virion - Hepatitis viruses - Salvia miltiorrhiza (redroot sage)); smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage))
PfamPF03357 (Snf7)
InterPro-
eggNOG-
NRGeneID:130988498

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 1.00000 XP_057768356.1
2 Endosome 内体 1.00000 XP_057768356.1
3 Cytoplasm 细胞质 0.80000 XP_057768356.1
4 Vesicle 囊泡 0.80000 XP_057768356.1
5 Midbody Midbody 0.80000 XP_057768356.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:9171309 G A EMS_canonical_SNV CDS_variant 1 B77
Chr6:9171324 G A EMS_canonical_SNV CDS_variant 1 B103
Chr6:9172185 G A EMS_canonical_SNV CDS_variant 1 B1
Chr6:9172956 C T EMS_canonical_SNV CDS_variant 1 B13

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057768356.1
219 aa
N
1
110
219
Snf7
C
PF03357 Snf7 21-184 aa
XP_057768357.1
219 aa
N
1
110
219
Snf7
C
PF03357 Snf7 21-184 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057768356.1 Pfam PF03357 Snf7 Family 21 184 4.5e-44 150.8 Snf7
XP_057768357.1 Pfam PF03357 Snf7 Family 21 184 4.5e-44 150.8 Snf7

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057912373.1
ATATTTGAGTTTTCCTAATTTCAAACAGGAGAATTTTTGAAAAATAAAAGAGGAATCAACTTTCTAAAGTGCTTGCCGTGTGGTCTCAAATTCCCACCTTATGAGTTATGTATGACTCGAATTTTGTTGGTGTGCGATAGCAGTTGTAAAAACATCACCACTTTCCCAAACGCGCTTAAGTCATTCCTAACCGACAACGTCTCTCTTTCTCTCTCGATCAATTCTCGAATTCCTATCGCTGATTTTGAACTCCTAGCAGT...
XM_057912374.1
GGAGAATTTTTGAAAAATAAAAGAGGAATCAACTTTCTAAAGTGCTTGCCGTGTGGTCTCAAATTCCCACCTTATGAGTTATGTATGACTCGAATTTTGTTGGTGTGCGATAGCAGTTGTAAAAACATCACCACTTTCCCAAACGCGCTTAAGTCATTCCTAACCGACAACGTCTCTCTTTCTCTCTCGATCAATTCTCGAATTCCTATCGCTGATTTTGAACTCCTAGCAGTCTTCTTCGATTTCCCAGGTACTTACTA...

CDS

2 records

下载 CDS FASTA
LOC130988498
ATGTTTTCTCGAATTCTGGGAAAACCTAAGCAACAGTCTAATAATGCTCTCACCACGCTTGACAAATTAAACGAGACTCTTGAGATGCTCGAGAAGAAGGAAAGTTTGCTCCAGAAGAAGGCATCTGCAGAGGTGGAGAAGGCCAAAGCATATACAAAAGCAAAGAACAAAAGAGCGGCCATACAGTGTTTGAAGAGGAAAAGACTATATGAAGAACAGATGGGGCAGCTGGCAAATTTCCAACTGCGTGTCCATGATCA...
LOC130988498
ATGTTTTCTCGAATTCTGGGAAAACCTAAGCAACAGTCTAATAATGCTCTCACCACGCTTGACAAATTAAACGAGACTCTTGAGATGCTCGAGAAGAAGGAAAGTTTGCTCCAGAAGAAGGCATCTGCAGAGGTGGAGAAGGCCAAAGCATATACAAAAGCAAAGAACAAAAGAGCGGCCATACAGTGTTTGAAGAGGAAAAGACTATATGAAGAACAGATGGGGCAGCTGGCAAATTTCCAACTGCGTGTCCATGATCA...

Protein

2 records

下载 Protein FASTA
XP_057768356.1
MFSRILGKPKQQSNNALTTLDKLNETLEMLEKKESLLQKKASAEVEKAKAYTKAKNKRAAIQCLKRKRLYEEQMGQLANFQLRVHDQMILLEGAKATTDTVDALRSGAAAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALATPIGAATDFDEDELEAELEELEGAELEDQLLQPASTAPAAQVQAPAGRIPARPAPQKRTEEEDELAALQAEMAL
XP_057768357.1
MFSRILGKPKQQSNNALTTLDKLNETLEMLEKKESLLQKKASAEVEKAKAYTKAKNKRAAIQCLKRKRLYEEQMGQLANFQLRVHDQMILLEGAKATTDTVDALRSGAAAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALATPIGAATDFDEDELEAELEELEGAELEDQLLQPASTAPAAQVQAPAGRIPARPAPQKRTEEEDELAALQAEMAL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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