Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G000953

染色体: Chr06 坐标: 9173677-9177213 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G000953
名称SmilChr06G000953
描述meiotic nuclear division protein 1 homolog
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向9173677 - 9177213 / +

ID 对照

NCBI Gene IDLOC130988496
GeneID130988496
locus_tag-
NCBI NameLOC130988496
原始查询SmilChr06G000953

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述meiotic nuclear division protein 1 homolog
产物meiotic nuclear division protein 1 homolog
ArabidopsisAT4G29170 (ATMND1)
Mnd1 family protein [Source:NCBI gene (formerly Entrezgene);Acc:829038]
identity=75.1; qcov=0.96; evalue=1e-117; confidence=high
RiceOs09g0280600 (MND1)
-
identity=75.4; qcov=0.916; evalue=5.03e-115; confidence=high
GOGO:0003690 (double-stranded DNA binding); GO:0005634 (nucleus); GO:0007131 (reciprocal meiotic recombination)
KEGG-
PfamPF03962 (Mnd1); PF18517 (LZ3wCH)
InterPro-
eggNOG-
NRGeneID:130988496

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057768353.1
2 Cytoplasm 细胞质 1.00000 XP_057768353.1
3 Nucleoplasm 核质 0.40000 XP_057768353.1
4 Chromosome 染色体 0.00000 XP_057768353.1
5 Centromere 着丝粒 0.00000 XP_057768353.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:9175477 G A EMS_canonical_SNV CDS_variant 4 A15,A19,B18,C46

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057768353.1
226 aa
N
1
113
226
Mnd1
LZ3wCH
C
PF03962 Mnd1 16-74 aa PF18517 LZ3wCH 150-206 aa
XP_057768354.1
226 aa
N
1
113
226
Mnd1
LZ3wCH
C
PF03962 Mnd1 16-74 aa PF18517 LZ3wCH 150-206 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057768353.1 Pfam PF03962 Mnd1 Domain 16 74 1e-24 87.3 Mnd1 HTH domain
XP_057768353.1 Pfam PF18517 LZ3wCH Domain 150 206 3.7e-21 75.6 Leucine zipper with capping helix domain
XP_057768354.1 Pfam PF03962 Mnd1 Domain 16 74 1e-24 87.3 Mnd1 HTH domain
XP_057768354.1 Pfam PF18517 LZ3wCH Domain 150 206 3.7e-21 75.6 Leucine zipper with capping helix domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057912371.1
TTCCCGCCAAACTATATATACAGAGGTGTAAAAGCGCGAAACCATTTCATTCCCAAATCCCTTGGCTTCCTCAGTACTCTCGTGCTGTTTTCTTCTTTTCGGCGTCCATCTCATCACCGTTATACCATGTCAAAAAAAAGAGGGCTCTCTTTGGAAGAGAAACGTGAGAAAATGCTACAGATTTTCTATGACTCTCAGGACTTCTTCCTTCTGAAGGAGCTTGAGAAATCGGGCCCCAAAAAGGGTGTAATTATGCAGTC...
XM_057912370.1
TTCCCGCCAAACTATATATACAGAGGTGTAAAAGCGCGAAACCATTTCATTCCCAAATCCCTTGGCTTCCTCAGTACTCTCGTGCTGTTTTCTTCTTTTCGGCGTCCATCTCATCACCGTTATACCATGTCAAAAAAAAGAGGGCTCTCTTTGGAAGAGAAACGTGAGAAAATGCTACAGATTTTCTATGACTCTCAGGACTTCTTCCTTCTGAAGGAGCTTGAGAAATCGGGCCCCAAAAAGGGTGTAATTATGCAGTC...

CDS

2 records

下载 CDS FASTA
LOC130988496
ATGTCAAAAAAAAGAGGGCTCTCTTTGGAAGAGAAACGTGAGAAAATGCTACAGATTTTCTATGACTCTCAGGACTTCTTCCTTCTGAAGGAGCTTGAGAAATCGGGCCCCAAAAAGGGTGTAATTATGCAGTCAGTGAAAGATGTTGTCCAAAGTCTAGTAGACGATGACCTTGTTTTCAAAGACAAGATTGGAACTTCTGTATACTTTTGGAGTCTTCCTAGCTGTGCTGGTAACCAGTTAAGAAATATACAGAAAAA...
LOC130988496
ATGTCAAAAAAAAGAGGGCTCTCTTTGGAAGAGAAACGTGAGAAAATGCTACAGATTTTCTATGACTCTCAGGACTTCTTCCTTCTGAAGGAGCTTGAGAAATCGGGCCCCAAAAAGGGTGTAATTATGCAGTCAGTGAAAGATGTTGTCCAAAGTCTAGTAGACGATGACCTTGTTTTCAAAGACAAGATTGGAACTTCTGTATACTTTTGGAGTCTTCCTAGCTGTGCTGGTAACCAGTTAAGAAATATACAGAAAAA...

Protein

2 records

下载 Protein FASTA
XP_057768353.1
MSKKRGLSLEEKREKMLQIFYDSQDFFLLKELEKSGPKKGVIMQSVKDVVQSLVDDDLVFKDKIGTSVYFWSLPSCAGNQLRNIQKKLDADLQSSEKRYVELNEQCSDLKKGREESDEREEALDELKAIEKKYNELKDEISQYSDNDPATFEAMKQATEVALAAANRWTDNIFTLRQWCSKNFPQAKEQLEQLYNEVGITDDIDYLELPSPVPLCSNCDPMLEGNL
XP_057768354.1
MSKKRGLSLEEKREKMLQIFYDSQDFFLLKELEKSGPKKGVIMQSVKDVVQSLVDDDLVFKDKIGTSVYFWSLPSCAGNQLRNIQKKLDADLQSSEKRYVELNEQCSDLKKGREESDEREEALDELKAIEKKYNELKDEISQYSDNDPATFEAMKQATEVALAAANRWTDNIFTLRQWCSKNFPQAKEQLEQLYNEVGITDDIDYLELPSPVPLCSNCDPMLEGNL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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