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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G000956

染色体: Chr06 坐标: 9219734-9222178 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G000956
名称SmilChr06G000956
描述pentatricopeptide repeat-containing protein At1g73400, mitochondrial-like
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向9219734 - 9222178 / +

ID 对照

NCBI Gene IDLOC130988479
GeneID130988479
locus_tag-
NCBI NameLOC130988479
原始查询SmilChr06G000956

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g73400, mitochondrial-like
产物pentatricopeptide repeat-containing protein At1g73400%2C mitochondrial-like
ArabidopsisAT1G73400 (AT1G73400)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843675]
identity=60.7; qcov=0.847; evalue=0; confidence=high
RiceOs02g0759500
-
identity=58.7; qcov=0.836; evalue=0; confidence=high
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130988479

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057768323.1
2 Chloroplast 叶绿体 0.20000 XP_057768323.1
3 Nucleus 细胞核 0.00000 XP_057768323.1
4 Chromosome 染色体 0.00000 XP_057768323.1
5 Centromere 着丝粒 0.00000 XP_057768323.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:9220935 G A EMS_canonical_SNV CDS_variant 1 C66
Chr6:9220959 G A EMS_canonical_SNV CDS_variant 1 A14
Chr6:9220962 C T EMS_canonical_SNV CDS_variant 5 B137,B139,B32,C4,C48
Chr6:9221084 G A EMS_canonical_SNV CDS_variant 4 C10,C14,C16,C34
Chr6:9221240 C T EMS_canonical_SNV CDS_variant 4 C10,C14,C16,C34
Chr6:9221260 G A EMS_canonical_SNV CDS_variant 1 D10
Chr6:9221289 C T EMS_canonical_SNV CDS_variant 5 A14,B70,B71,C62,C82
Chr6:9221424 G A EMS_canonical_SNV CDS_variant 1 C42
Chr6:9221571 G A EMS_canonical_SNV CDS_variant 2 B56,C30
Chr6:9221669 C T EMS_canonical_SNV CDS_variant 1 B136
Chr6:9221921 TGA T 2bp_deletion frameshift_variant 1 A20
Chr6:9221921 TGA T 2bp_deletion CDS_variant 1 A20

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768323.1
529 aa
N
1
264
529
PPR_3
PPR_2
PPR
PPR_3
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR
C
PF13812 PPR_3 192-235 aa PF13041 PPR_2 194-241 aa PF01535 PPR 198-223 aa PF13812 PPR_3 222-274 aa PF01535 PPR 231-259 aa PF13812 PPR_3 251-314 aa PF12854 PPR_1 258-291 aa PF13041 PPR_2 264-312 aa PF01535 PPR 265-294 aa PF13041 PPR_2 300-348 aa PF01535 PPR 304-333 aa PF23276 TPR_24 305-398 aa PF13812 PPR_3 324-384 aa PF12854 PPR_1 332-363 aa PF13041 PPR_2 335-384 aa PF01535 PPR 339-364 aa PF13812 PPR_3 360-417 aa PF12854 PPR_1 369-398 aa PF13041 PPR_2 370-417 aa PF01535 PPR 373-403 aa PF12854 PPR_1 402-434 aa PF13041 PPR_2 405-452 aa PF01535 PPR 409-438 aa PF01535 PPR 444-472 aa
XP_057768324.1
529 aa
N
1
264
529
PPR_3
PPR_2
PPR
PPR_3
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR
C
PF13812 PPR_3 192-235 aa PF13041 PPR_2 194-241 aa PF01535 PPR 198-223 aa PF13812 PPR_3 222-274 aa PF01535 PPR 231-259 aa PF13812 PPR_3 251-314 aa PF12854 PPR_1 258-291 aa PF13041 PPR_2 264-312 aa PF01535 PPR 265-294 aa PF13041 PPR_2 300-348 aa PF01535 PPR 304-333 aa PF23276 TPR_24 305-398 aa PF13812 PPR_3 324-384 aa PF12854 PPR_1 332-363 aa PF13041 PPR_2 335-384 aa PF01535 PPR 339-364 aa PF13812 PPR_3 360-417 aa PF12854 PPR_1 369-398 aa PF13041 PPR_2 370-417 aa PF01535 PPR 373-403 aa PF12854 PPR_1 402-434 aa PF13041 PPR_2 405-452 aa PF01535 PPR 409-438 aa PF01535 PPR 444-472 aa
XP_057768325.1
568 aa
N
1
284
568
PPR_2
PPR
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR
C
PF13041 PPR_2 233-280 aa PF01535 PPR 237-262 aa PF01535 PPR 270-298 aa PF13812 PPR_3 290-353 aa PF12854 PPR_1 297-330 aa PF13041 PPR_2 303-351 aa PF01535 PPR 304-333 aa PF13041 PPR_2 339-387 aa PF01535 PPR 343-372 aa PF23276 TPR_24 344-437 aa PF13812 PPR_3 363-423 aa PF12854 PPR_1 371-402 aa PF13041 PPR_2 374-423 aa PF01535 PPR 378-403 aa PF13812 PPR_3 399-456 aa PF12854 PPR_1 408-437 aa PF13041 PPR_2 409-456 aa PF01535 PPR 412-442 aa PF12854 PPR_1 441-473 aa PF13041 PPR_2 444-491 aa PF01535 PPR 448-477 aa PF01535 PPR 483-511 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057768323.1 Pfam PF13812 PPR_3 Repeat 192 235 7.3e-30 103.6 Pentatricopeptide repeat domain
XP_057768323.1 Pfam PF13041 PPR_2 Repeat 194 241 2e-64 214.2 PPR repeat family
XP_057768323.1 Pfam PF01535 PPR Repeat 198 223 2.4e-40 134.7 PPR repeat
XP_057768323.1 Pfam PF13812 PPR_3 Repeat 222 274 7.3e-30 103.6 Pentatricopeptide repeat domain
XP_057768323.1 Pfam PF01535 PPR Repeat 231 259 2.4e-40 134.7 PPR repeat
XP_057768323.1 Pfam PF13812 PPR_3 Repeat 251 314 7.3e-30 103.6 Pentatricopeptide repeat domain
XP_057768323.1 Pfam PF12854 PPR_1 Repeat 258 291 5.2e-49 164.4 PPR repeat
XP_057768323.1 Pfam PF13041 PPR_2 Repeat 264 312 2e-64 214.2 PPR repeat family
XP_057768323.1 Pfam PF01535 PPR Repeat 265 294 2.4e-40 134.7 PPR repeat
XP_057768323.1 Pfam PF13041 PPR_2 Repeat 300 348 2e-64 214.2 PPR repeat family
XP_057768323.1 Pfam PF01535 PPR Repeat 304 333 2.4e-40 134.7 PPR repeat
XP_057768323.1 Pfam PF23276 TPR_24 Repeat 305 398 9.6e-20 71.6 Pentatricopeptide repeat-containing protein
XP_057768323.1 Pfam PF13812 PPR_3 Repeat 324 384 7.3e-30 103.6 Pentatricopeptide repeat domain
XP_057768323.1 Pfam PF12854 PPR_1 Repeat 332 363 5.2e-49 164.4 PPR repeat
XP_057768323.1 Pfam PF13041 PPR_2 Repeat 335 384 2e-64 214.2 PPR repeat family
XP_057768323.1 Pfam PF01535 PPR Repeat 339 364 2.4e-40 134.7 PPR repeat
XP_057768323.1 Pfam PF13812 PPR_3 Repeat 360 417 7.3e-30 103.6 Pentatricopeptide repeat domain
XP_057768323.1 Pfam PF12854 PPR_1 Repeat 369 398 5.2e-49 164.4 PPR repeat
XP_057768323.1 Pfam PF13041 PPR_2 Repeat 370 417 2e-64 214.2 PPR repeat family
XP_057768323.1 Pfam PF01535 PPR Repeat 373 403 2.4e-40 134.7 PPR repeat
XP_057768323.1 Pfam PF12854 PPR_1 Repeat 402 434 5.2e-49 164.4 PPR repeat
XP_057768323.1 Pfam PF13041 PPR_2 Repeat 405 452 2e-64 214.2 PPR repeat family
XP_057768323.1 Pfam PF01535 PPR Repeat 409 438 2.4e-40 134.7 PPR repeat
XP_057768323.1 Pfam PF01535 PPR Repeat 444 472 2.4e-40 134.7 PPR repeat
XP_057768324.1 Pfam PF13812 PPR_3 Repeat 192 235 7.3e-30 103.6 Pentatricopeptide repeat domain
XP_057768324.1 Pfam PF13041 PPR_2 Repeat 194 241 2e-64 214.2 PPR repeat family
XP_057768324.1 Pfam PF01535 PPR Repeat 198 223 2.4e-40 134.7 PPR repeat
XP_057768324.1 Pfam PF13812 PPR_3 Repeat 222 274 7.3e-30 103.6 Pentatricopeptide repeat domain
XP_057768324.1 Pfam PF01535 PPR Repeat 231 259 2.4e-40 134.7 PPR repeat
XP_057768324.1 Pfam PF13812 PPR_3 Repeat 251 314 7.3e-30 103.6 Pentatricopeptide repeat domain
XP_057768324.1 Pfam PF12854 PPR_1 Repeat 258 291 5.2e-49 164.4 PPR repeat
XP_057768324.1 Pfam PF13041 PPR_2 Repeat 264 312 2e-64 214.2 PPR repeat family
XP_057768324.1 Pfam PF01535 PPR Repeat 265 294 2.4e-40 134.7 PPR repeat
XP_057768324.1 Pfam PF13041 PPR_2 Repeat 300 348 2e-64 214.2 PPR repeat family
XP_057768324.1 Pfam PF01535 PPR Repeat 304 333 2.4e-40 134.7 PPR repeat
XP_057768324.1 Pfam PF23276 TPR_24 Repeat 305 398 9.6e-20 71.6 Pentatricopeptide repeat-containing protein
XP_057768324.1 Pfam PF13812 PPR_3 Repeat 324 384 7.3e-30 103.6 Pentatricopeptide repeat domain
XP_057768324.1 Pfam PF12854 PPR_1 Repeat 332 363 5.2e-49 164.4 PPR repeat
XP_057768324.1 Pfam PF13041 PPR_2 Repeat 335 384 2e-64 214.2 PPR repeat family
XP_057768324.1 Pfam PF01535 PPR Repeat 339 364 2.4e-40 134.7 PPR repeat
XP_057768324.1 Pfam PF13812 PPR_3 Repeat 360 417 7.3e-30 103.6 Pentatricopeptide repeat domain
XP_057768324.1 Pfam PF12854 PPR_1 Repeat 369 398 5.2e-49 164.4 PPR repeat
XP_057768324.1 Pfam PF13041 PPR_2 Repeat 370 417 2e-64 214.2 PPR repeat family
XP_057768324.1 Pfam PF01535 PPR Repeat 373 403 2.4e-40 134.7 PPR repeat
XP_057768324.1 Pfam PF12854 PPR_1 Repeat 402 434 5.2e-49 164.4 PPR repeat
XP_057768324.1 Pfam PF13041 PPR_2 Repeat 405 452 2e-64 214.2 PPR repeat family
XP_057768324.1 Pfam PF01535 PPR Repeat 409 438 2.4e-40 134.7 PPR repeat
XP_057768324.1 Pfam PF01535 PPR Repeat 444 472 2.4e-40 134.7 PPR repeat
XP_057768325.1 Pfam PF13041 PPR_2 Repeat 233 280 1.2e-62 208.6 PPR repeat family
XP_057768325.1 Pfam PF01535 PPR Repeat 237 262 4.6e-40 133.8 PPR repeat
XP_057768325.1 Pfam PF01535 PPR Repeat 270 298 4.6e-40 133.8 PPR repeat
XP_057768325.1 Pfam PF13812 PPR_3 Repeat 290 353 1.5e-29 102.6 Pentatricopeptide repeat domain
XP_057768325.1 Pfam PF12854 PPR_1 Repeat 297 330 9.6e-49 163.5 PPR repeat
XP_057768325.1 Pfam PF13041 PPR_2 Repeat 303 351 1.2e-62 208.6 PPR repeat family
XP_057768325.1 Pfam PF01535 PPR Repeat 304 333 4.6e-40 133.8 PPR repeat
XP_057768325.1 Pfam PF13041 PPR_2 Repeat 339 387 1.2e-62 208.6 PPR repeat family
XP_057768325.1 Pfam PF01535 PPR Repeat 343 372 4.6e-40 133.8 PPR repeat
XP_057768325.1 Pfam PF23276 TPR_24 Repeat 344 437 1.5e-19 70.9 Pentatricopeptide repeat-containing protein
XP_057768325.1 Pfam PF13812 PPR_3 Repeat 363 423 1.5e-29 102.6 Pentatricopeptide repeat domain
XP_057768325.1 Pfam PF12854 PPR_1 Repeat 371 402 9.6e-49 163.5 PPR repeat
XP_057768325.1 Pfam PF13041 PPR_2 Repeat 374 423 1.2e-62 208.6 PPR repeat family
XP_057768325.1 Pfam PF01535 PPR Repeat 378 403 4.6e-40 133.8 PPR repeat
XP_057768325.1 Pfam PF13812 PPR_3 Repeat 399 456 1.5e-29 102.6 Pentatricopeptide repeat domain
XP_057768325.1 Pfam PF12854 PPR_1 Repeat 408 437 9.6e-49 163.5 PPR repeat
XP_057768325.1 Pfam PF13041 PPR_2 Repeat 409 456 1.2e-62 208.6 PPR repeat family
XP_057768325.1 Pfam PF01535 PPR Repeat 412 442 4.6e-40 133.8 PPR repeat
XP_057768325.1 Pfam PF12854 PPR_1 Repeat 441 473 9.6e-49 163.5 PPR repeat
XP_057768325.1 Pfam PF13041 PPR_2 Repeat 444 491 1.2e-62 208.6 PPR repeat family
XP_057768325.1 Pfam PF01535 PPR Repeat 448 477 4.6e-40 133.8 PPR repeat
XP_057768325.1 Pfam PF01535 PPR Repeat 483 511 4.6e-40 133.8 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057912342.1
ATTTTCTCATTTAATTATTTTTGAAGAAAAGGCTTTTCTTTTTTATCCTGTTGTGATATAGTACTACTATAGTAATGTGTGCATAGATTGTTGGCTGTCTCTGTTAATATAGTTTGTATTAGAATTTATAACAAAGCACCTTAGTTGTTGCTATTATTAAATAACATTAAAATTCAATTCCTTCCTCAAAAAGAAAAGAAAAAATATAGTATTTCATATTCATAGAGTTTCAAGTTACTGTTCGCGCGAATTTTCTCCAC...
XM_057912341.1
AAGAAAAGAAAAAATATAGTATTTCATATTCATAGAGTTTCAAGTTACTGTTCGCGCGAATTTTCTCCACTCCTCTGATCACTCCTCCAGCACGCGAAGCTTTTGACGTGTTCGATGAAATGCTTCAACGGCATGGCTGTGCTTTCTTTCCTCTGAACCTGCATTTTCTTCTATTCTGTGTCTGATTTGACGACGCATTGAGGTCTTGTTAATTCTTTTATGTGCAATGTCACGGCGGCTTTCACTCGTATACAGAACTC...

CDS

3 records

下载 CDS FASTA
LOC130988479
ATGTCACGGCGGCTTTCACTCGTATACAGAACTCACAGATTATTGAGAAGTGCATATTCGCCATCATTCACTAATCATGTTGCAGCAGCGCCTTATCCAGTTGCTTTTAGTTGGTATAAAATGCAGGCCTACCCCTCTTTCTTATCGAGCAGAAATATTCTCATCAGCCCGCATTTTTCATGGCATGAAATTGTGACTGGATATTCACTTACGTTTAGGCCCTATTGCAGTTTAGAGGAATTTGATTTGGCCAAGCCATC...
LOC130988479
ATGTCACGGCGGCTTTCACTCGTATACAGAACTCACAGATTATTGAGAAGTGCATATTCGCCATCATTCACTAATCATGTTGCAGCAGCGCCTTATCCAGTTGCTTTTAGTTGTTTAGAGGAATTTGATTTGGCCAAGCCATCTTCCACAGATGGAACTGATCATGCTGATGAGGTCTATAAAACCGTGTTGGATTGTGCAAGGCCCGAGTACAAAATGGAGGCCGCTCTTGATGAACTTGGCATTGAATTGACAACACC...

Protein

3 records

下载 Protein FASTA
XP_057768323.1
MSRRLSLVYRTHRLLRSAYSPSFTNHVAAAPYPVAFSCLEEFDLAKPSSTDGTDHADEVYKTVLDCARPEYKMEAALDELGIELTTPLVVEVLHRLRFEEKLAFRFFNWAGHQEHYSHEPESYNRMIEILSSTKYKVKQFRIICDLLDYMKRSDKSSVPIDVLLSILRRYTEKHLTHLQKFAKKKKIRVKTQPEINAFNLLLDAMCKCALVEDAEAMYQRVRSKVKPNADTYNILFFGWCRVRNPTRAMGVLENMISMGH...
XP_057768324.1
MSRRLSLVYRTHRLLRSAYSPSFTNHVAAAPYPVAFSCLEEFDLAKPSSTDGTDHADEVYKTVLDCARPEYKMEAALDELGIELTTPLVVEVLHRLRFEEKLAFRFFNWAGHQEHYSHEPESYNRMIEILSSTKYKVKQFRIICDLLDYMKRSDKSSVPIDVLLSILRRYTEKHLTHLQKFAKKKKIRVKTQPEINAFNLLLDAMCKCALVEDAEAMYQRVRSKVKPNADTYNILFFGWCRVRNPTRAMGVLENMISMGH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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