Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000957`

染色体: Chr06 坐标: 9223111-9227648 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000957`
名称	SmilChr06G000957
描述	uncharacterized SmilChr06G000957
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	9223111 - 9227648 / `-`

ID 对照

NCBI Gene ID	`LOC130988483`
GeneID	`130988483`
locus_tag	`-`
NCBI Name	`LOC130988483`
原始查询	`SmilChr06G000957`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Actin-like ATPase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828368]; symbol=AT4G22720; hit=AT4G22720; species=arabidopsis; confidence=high
产物	Actin-like ATPase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828368]; symbol=AT4G22720; hit=AT4G22720; species=arabidopsis; confidence=high
Arabidopsis	`AT4G22720` (AT4G22720) Actin-like ATPase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828368] identity=86.3; qcov=0.983; evalue=0; confidence=high
Rice	`Os05g0194600` (GCP2) - identity=85.4; qcov=0.96; evalue=0; confidence=high
GO	GO:0000408 (EKC/KEOPS complex); GO:0002949 (tRNA threonylcarbamoyladenosine modification); GO:0005737 (cytoplasm)
KEGG	-
Pfam	PF00814 (TsaD); PF22521 (HypF_C_2)
InterPro	-
eggNOG	-
NR	GeneID:130988483

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057768330.1`
2	Cytosol	细胞质基质	1.00000	`XP_057768330.1`
3	Nucleus	细胞核	0.40000	`XP_057768330.1`
4	Nucleoplasm	核质	0.20000	`XP_057768330.1`
5	Chromosome	染色体	0.00000	`XP_057768330.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:9223621`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr6:9223766`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B22,B81
`Chr6:9224257`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B48
`Chr6:9224358`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr6:9225618`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B15

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768330.1

350 aa

175

350

TsaD

HypF_C_2

PF00814 TsaD 35-307 aa PF22521 HypF_C_2 180-301 aa

XP_057768331.1

350 aa

175

350

TsaD

HypF_C_2

PF00814 TsaD 35-307 aa PF22521 HypF_C_2 180-301 aa

XP_057768332.1

350 aa

175

350

TsaD

HypF_C_2

PF00814 TsaD 35-307 aa PF22521 HypF_C_2 180-301 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768330.1`	Pfam	`PF00814`	TsaD	Family	35	307	3.3e-84	283.4	tRNA N6-adenosine threonylcarbamoyltransferase
`XP_057768330.1`	Pfam	`PF22521`	HypF_C_2	Domain	180	301	4.1e-07	30.7	Carbamoyltransferase, Kae1-like Domain, second subdomain
`XP_057768331.1`	Pfam	`PF00814`	TsaD	Family	35	307	3.3e-84	283.4	tRNA N6-adenosine threonylcarbamoyltransferase
`XP_057768331.1`	Pfam	`PF22521`	HypF_C_2	Domain	180	301	4.1e-07	30.7	Carbamoyltransferase, Kae1-like Domain, second subdomain
`XP_057768332.1`	Pfam	`PF00814`	TsaD	Family	35	307	3.3e-84	283.4	tRNA N6-adenosine threonylcarbamoyltransferase
`XP_057768332.1`	Pfam	`PF22521`	HypF_C_2	Domain	180	301	4.1e-07	30.7	Carbamoyltransferase, Kae1-like Domain, second subdomain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057912347.1
GTATTACAATAAAACAAACCGCCTCATAAAATAAAAGAATTGAATCAGGTAACTTTTTAACCGAGACACGTGTTCGCATCCTTAAGGTGATGTGCACCTGCGTATGGGTAGGGTAGACTTAACCGGGGTTATTTGCCCCTGTTAGCAATACACATAAAAGTCAATTTGAAACCAAAAACTGAAAAACCCTATCAATTCATTCTGCCCGCCGCCTCCCTCTACAGTGATCACACACTCTCCTCTACCCTTCTCCCGCCGCC...

XM_057912349.1
GACTTAACCGGGGTTATTTGCCCCTGTTAGCAATACACATAAAAGTCAATTTGAAACCAAAAACTGAAAAACCCTATCAATTCATTCTGCCCGCCGCCTCCCTCTACAGTGATCACACACTCTCCTCTACCCTTCTCCCGCCGCCGCCGCTCCCCGTTCTGTCCCCCGGAAACCGTCCATCCACACCGGCGCGGCGGCGAGCTTCGTCGAGTCCTTGCAGCGACCGCTCACCACTTCCCCAGTTCGGCGCCGGCCCGCCC...

CDS

3 records

下载 CDS FASTA

LOC130988483
ATGGCGGAGAAGAAACGGCTAATAGCGTTAGGGTTTGAAGGCTCCGCTAACAAAATTGCTGTTGGTGTTGTGACGCTGGACGGTTGCATTTTGTCGAATCCTCGTCATACATACATCACACCGCCAGGGCAAGGTTTTCTCCCCCGCGAAACCGCCCAACACCATCTCCAGCACGTGCTGCCGCTTCTCAAACAGGCGCTGGCTGAGGCCAACATTACAGTGGAGGATGTCGACTGCCTTTGCTATACCAAGGGCCCGGG...

Protein

3 records

下载 Protein FASTA

XP_057768330.1
MAEKKRLIALGFEGSANKIAVGVVTLDGCILSNPRHTYITPPGQGFLPRETAQHHLQHVLPLLKQALAEANITVEDVDCLCYTKGPGMGAPLQVSAIVIRILSQLWKKPIVAVNHCVAHIEMGRIVTGADDPVVLYVSGGNTQVIAYSEGRYRIFGETIDIAVGNCLDRFARVLNLSNDPSPGYNIEQLAKKGEKFIELPYVVKGMDVSFSGILSYIEATAEEKLKNDECTPADLCYSLQETLFAMLVEITERAMAHCDT...

XP_057768331.1
MAEKKRLIALGFEGSANKIAVGVVTLDGCILSNPRHTYITPPGQGFLPRETAQHHLQHVLPLLKQALAEANITVEDVDCLCYTKGPGMGAPLQVSAIVIRILSQLWKKPIVAVNHCVAHIEMGRIVTGADDPVVLYVSGGNTQVIAYSEGRYRIFGETIDIAVGNCLDRFARVLNLSNDPSPGYNIEQLAKKGEKFIELPYVVKGMDVSFSGILSYIEATAEEKLKNDECTPADLCYSLQETLFAMLVEITERAMAHCDT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器