Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000967`

染色体: Chr06 坐标: 9397385-9401885 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000967`
名称	SmilChr06G000967
描述	uncharacterized SmilChr06G000967
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	9397385 - 9401885 / `+`

ID 对照

NCBI Gene ID	`LOC130988476`
GeneID	`130988476`
locus_tag	`-`
NCBI Name	`LOC130988476`
原始查询	`SmilChr06G000967`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Regulator of Vps4 activity in the MVB pathway protein [Source:NCBI gene (formerly Entrezgene);Acc:816490]; symbol=AT2G19710; hit=AT2G19710; species=arabidopsis; confidence=low
产物	Regulator of Vps4 activity in the MVB pathway protein [Source:NCBI gene (formerly Entrezgene);Acc:816490]; symbol=AT2G19710; hit=AT2G19710; species=arabidopsis; confidence=low
Arabidopsis	`AT2G19710` (AT2G19710) Regulator of Vps4 activity in the MVB pathway protein [Source:NCBI gene (formerly Entrezgene);Acc:816490] identity=47.2; qcov=0.332; evalue=1.07e-53; confidence=low
Rice	`Os01g0706400` (P0692C11.22-2) - identity=64.7; qcov=0.137; evalue=5.71e-49; confidence=weak
GO	GO:0015031 (protein transport)
KEGG	-
Pfam	PF03398 (Ist1)
InterPro	-
eggNOG	-
NR	GeneID:130988476

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057768319.1`
2	Nucleus membrane	核膜	0.40000	`XP_057768320.1`
3	Nucleus	细胞核	0.20000	`XP_057768320.1`
4	Golgi apparatus	高尔基体	0.20000	`XP_057768320.1`
5	Chromosome	染色体	0.00000	`XP_057768319.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:9397600`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr6:9397632`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B20,C82,C9
`Chr6:9398602`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B26,C40,C9
`Chr6:9399420`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A20,A7,B80,B99
`Chr6:9399477`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,D4
`Chr6:9399729`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B122,B132,B82,C77,D4
`Chr6:9399784`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B122,B132,B82,C77,D4
`Chr6:9399917`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B122,B132,B82,C77,D4
`Chr6:9400174`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B64,B90
`Chr6:9400235`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B108,B2,B45,B98,C72
`Chr6:9400524`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr6:9400543`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768319.1

944 aa

472

944

Ist1

PF03398 Ist1 24-188 aa

XP_057768320.1

868 aa

434

868

Ist1

PF03398 Ist1 1-112 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768319.1`	Pfam	`PF03398`	Ist1	Family	24	188	1e-59	201.9	Regulator of Vps4 activity in the MVB pathway
`XP_057768320.1`	Pfam	`PF03398`	Ist1	Family	1	112	2.7e-35	122.4	Regulator of Vps4 activity in the MVB pathway

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057912336.1
AAAAGTTATTCGCCTATGTCTGCGTTGCGAAACACGAATCCAAATACTTATCAAATAAATCCATTTTCTCTCTTTTACAAGTAATATCAGAAACTCAGTGATCATAGCCTCGAAATCCGTTGTTCTTAGAATCCAGAAATCTCAGTTGATTGATTAGCTGGCTTCGGTTGATTAGTTTGCAAAAAATTATCGACCAAAACGATGAAGAAATCGAAGTTTCTCAAGAGCTCAAAGGAGTTGCTCTCTCGGAGCTTCAATCC...

XM_057912337.1
GTGTTCTGATCGAGAATCATTACGCAGAAAAAGCGTGGATATTAATTAGATCCAAATCAGACTTGTGTAGGGACCGCATAAACGTTGATCTAGAATTGACTTGTAACAGTGAAGGATAACGTTGTCTGGTTTCGGATGATAATGTTCCAAACGGCTTAAGACTAAATTAGGACACAACAAATCACAGAAGCCGAGTTGTCAGTCTTATCTGTTCAAAGTGAAATGCTCAGTTGAGCATGTGATTAGGGAAGAGAAGATGT...

CDS

2 records

下载 CDS FASTA

LOC130988476
ATGAAGAAATCGAAGTTTCTCAAGAGCTCAAAGGAGTTGCTCTCTCGGAGCTTCAATCCTTCCAAATGCAAGACGTCGTTGAGGCTGGCGGCGTCGCGGCTCAAGTTGTTGAGGAACAAGAAAGAAGCTCAGGTGAAGCAGATGAGGCGGGAAATATCACTCTTGCTCGAATCCGGACAAGATCAAACGGCTCGAATCCGAGTTGAGCATGTGATTAGGGAAGAGAAGATGTTGGCTGCATTTGATCTTATCGGAATCTA...

LOC130988476
ATGTTGGCTGCATTTGATCTTATCGGAATCTATTGCGAACTTATTGTTGCAAGGCTGCCTATTATTGAGTCTCAAAAGATTTGCCCCATTGACGTGAAAGAGGCAATTGCAAGCGTGGTCTATGCTTCCCCGAGATGTGGAGACGTACCTGAACTTGTAGAAGTCAAGAAACAATTTACAGAGAAATACGGAAAAGATTTTGTAACTGCAGCCATAGAACTTCGTCCAGAATGTGGTGTCAGCCGTATGTTGGTTGAGAA...

Protein

2 records

下载 Protein FASTA

XP_057768319.1
MKKSKFLKSSKELLSRSFNPSKCKTSLRLAASRLKLLRNKKEAQVKQMRREISLLLESGQDQTARIRVEHVIREEKMLAAFDLIGIYCELIVARLPIIESQKICPIDVKEAIASVVYASPRCGDVPELVEVKKQFTEKYGKDFVTAAIELRPECGVSRMLVEKLSALAPDGETKTKILSTIAEEHNVKWEAKSFEQNSAPASDLLSGPTTFVKESERLPEPPRGNQLHDSTLNFTQVDHGSSPRTEVSGFNSALGGERAQ...

XP_057768320.1
MLAAFDLIGIYCELIVARLPIIESQKICPIDVKEAIASVVYASPRCGDVPELVEVKKQFTEKYGKDFVTAAIELRPECGVSRMLVEKLSALAPDGETKTKILSTIAEEHNVKWEAKSFEQNSAPASDLLSGPTTFVKESERLPEPPRGNQLHDSTLNFTQVDHGSSPRTEVSGFNSALGGERAQFFRGDSDNVPRDRQRWNMNFKDATSAAQAAAESAELASMAARAAAELSSRGRISRQSSTESHKSDDHSSRGGAPDT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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