Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000974`

染色体: Chr06 坐标: 9465724-9468300 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000974`
名称	SmilChr06G000974
描述	cation-dependent phenylpropanoid and flavonoid 8-O-methyltransferase 1-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	9465724 - 9468300 / `+`

ID 对照

NCBI Gene ID	`LOC130988495`
GeneID	`130988495`
locus_tag	`-`
NCBI Name	`LOC130988495`
原始查询	`SmilChr06G000974`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cation-dependent phenylpropanoid and flavonoid 8-O-methyltransferase 1-like
产物	cation-dependent phenylpropanoid and flavonoid 8-O-methyltransferase 1-like
Arabidopsis	`AT4G26220` (AT4G26220) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828728] identity=66.1; qcov=0.953; evalue=9.21e-110; confidence=high
Rice	`Os06g0165800` (ROMT-16) - identity=57; qcov=1; evalue=2.41e-94; confidence=high
GO	GO:0008171 (O-methyltransferase activity); GO:0008757 (S-adenosylmethionine-dependent methyltransferase activity)
KEGG	smil00940 (Phenylpropanoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00941 (Flavonoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00945 (Stilbenoid, diarylheptanoid and gingerol biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01596 (Methyltransf_3); PF13578 (Methyltransf_24)
InterPro	-
eggNOG	-
NR	GeneID:130988495

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057768350.1`
2	Nucleus	细胞核	0.60000	`XP_057768350.1`
3	Cytosol	细胞质基质	0.40000	`XP_057768350.1`
4	Chromosome	染色体	0.00000	`XP_057768350.1`
5	Centromere	着丝粒	0.00000	`XP_057768350.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:9466517`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B57,C23,C24,C6
`Chr6:9467267`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B12,B78
`Chr6:9467281`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B44,C61
`Chr6:9467307`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B12,B44,B46,D3
`Chr6:9467349`	`T`	`TG`	1bp_insertion	frameshift_variant	4	B122,B82,C77,D4
`Chr6:9467349`	`T`	`TG`	1bp_insertion	CDS_variant	4	B122,B82,C77,D4
`Chr6:9467927`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768350.1

235 aa

118

235

Methyltransf_3

Methyltransf_24

PF01596 Methyltransf_3 26-234 aa PF13578 Methyltransf_24 74-180 aa

XP_057768352.1

235 aa

118

235

Methyltransf_3

Methyltransf_24

PF01596 Methyltransf_3 26-234 aa PF13578 Methyltransf_24 74-180 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768350.1`	Pfam	`PF01596`	Methyltransf_3	Domain	26	234	4.8e-76	255.3	O-methyltransferase
`XP_057768350.1`	Pfam	`PF13578`	Methyltransf_24	Domain	74	180	5.7e-12	47.2	Methyltransferase domain
`XP_057768352.1`	Pfam	`PF01596`	Methyltransf_3	Domain	26	234	4.8e-76	255.3	O-methyltransferase
`XP_057768352.1`	Pfam	`PF13578`	Methyltransf_24	Domain	74	180	5.7e-12	47.2	Methyltransferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057912367.1
CACAATTATTGCACTTATTCGAAATTCTTGTTTTAGTATAGTCTTAAATTCTCTTTGTGATGATTGAAAGTATTACTGCAACCCCTCCCTATTTATATAAGTTTTAAGCTCTTATATTCAATGAATTCAGAGTAATATAGGGTTGATGAGTCATTTAGTAGGCTACAAATTTTCACGCACAGAGCTCTGCAGCAGCAAGAATACTGATTTCTTGATTGTATTTGAAGGATTTGAGTTGTTAGGAATTAGTGATGGAGACC...

XM_057912369.1
TATTCAATGAATTCAGAGTAATATAGGGTTGATGAGTCATTTAGTAGGCTACAAATTTTCACGCACAGAGGATTTGAGTTGTTAGGAATTAGTGATGGAGACCAAAGCTAGTACTCCTAAACAAAAAGGCTTGTTGCAAACCGCAGAGTTGTACAAGTATATAATGGGTACTAGCGTGTATCCACGCGAACAACAATGTCTCAAGGAGCTCAGAGCTATCACATCCACTCATCCAAGGGCTGTGATGGGTACGGCACCTG...

CDS

2 records

下载 CDS FASTA

LOC130988495
ATGGAGACCAAAGCTAGTACTCCTAAACAAAAAGGCTTGTTGCAAACCGCAGAGTTGTACAAGTATATAATGGGTACTAGCGTGTATCCACGCGAACAACAATGTCTCAAGGAGCTCAGAGCTATCACATCCACTCATCCAAGGGCTGTGATGGGTACGGCACCTGATGTGGGACAGTTTATGGCCTTGCTTTTAAAGGCAATCAACGCGAAAAAGACGATTGAAATTGGAGTGTTTACTGGATATTCCCTTCTCGTAAC...

Protein

2 records

下载 Protein FASTA

XP_057768350.1
METKASTPKQKGLLQTAELYKYIMGTSVYPREQQCLKELRAITSTHPRAVMGTAPDVGQFMALLLKAINAKKTIEIGVFTGYSLLVTALTIPDDGKITAIDMNRSSYLIGLPIIEKAGVEHKINFIESEALPALDQLLKDPENKGTFDFAFVDADKADYANYLERVLELLKPGGIAVYDNTLWQGTVAMDEGSVPERKLATRKDSIEFNKYIAGDARVQISQVPLGDGITICRRN

XP_057768352.1
METKASTPKQKGLLQTAELYKYIMGTSVYPREQQCLKELRAITSTHPRAVMGTAPDVGQFMALLLKAINAKKTIEIGVFTGYSLLVTALTIPDDGKITAIDMNRSSYLIGLPIIEKAGVEHKINFIESEALPALDQLLKDPENKGTFDFAFVDADKADYANYLERVLELLKPGGIAVYDNTLWQGTVAMDEGSVPERKLATRKDSIEFNKYIAGDARVQISQVPLGDGITICRRN

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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