当前解析结果
SmilChr06G000990| 统一新 Gene ID | SmilChr06G000990 |
|---|---|
| 名称 | SmilChr06G000990 |
| 描述 | uncharacterized SmilChr06G000990 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 9780960 - 9783909 / - |
| NCBI Gene ID | LOC130988524 |
|---|---|
| GeneID | 130988524 |
| locus_tag | - |
| NCBI Name | LOC130988524 |
| 原始查询 | SmilChr06G000990 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Aminotransferase-like, plant mobile domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:831969]; symbol=AT5G18510; hit=AT5G18510; species=arabidopsis; confidence=weak |
| 产物 | Aminotransferase-like, plant mobile domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:831969]; symbol=AT5G18510; hit=AT5G18510; species=arabidopsis; confidence=weak |
| Arabidopsis | AT5G18510 (AT5G18510)Aminotransferase-like, plant mobile domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:831969] identity=21.5; qcov=0.489; evalue=2.04e-09; confidence=weak |
| Rice | Os03g0565300- identity=23.9; qcov=0.29; evalue=3.33e-06; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | PF10536 (PMD) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988524 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057768383.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057768383.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057768383.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057768383.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057768383.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:9781120 |
G |
A |
EMS_canonical_SNV | stop_gained | 35 | A1,A7,A9,B111,B117,B118,B119,B123,B138,B31,B34,B41,B48,B5,B54,B55,B59,B6,B67,B7,B79,B82,B86,B89,B9,C50,C51,C61,C63,C67,C74,C78,C84,C86,D5 |
Chr6:9781306 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A22,B45,C40 |
Chr6:9781334 |
TA |
T |
1bp_deletion | frameshift_variant | 5 | C1,C49,C54,C8,C9 |
Chr6:9781334 |
TA |
T |
1bp_deletion | CDS_variant | 5 | C1,C49,C54,C8,C9 |
Chr6:9781344 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B122,B123,B99,C44,C69 |
Chr6:9781351 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B20 |
Chr6:9781421 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B122,C14 |
Chr6:9781466 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B135,B64 |
Chr6:9781478 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B135,B64,C19 |
Chr6:9781542 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C9 |
Chr6:9781547 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B135,B64,C19 |
Chr6:9781562 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B64,C19 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057768383.1PF10536
PMD 297-569 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768383.1 |
Pfam | PF10536 |
PMD | Domain | 297 | 569 | 1.6e-27 | 97.4 | Plant mobile domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。