当前解析结果
SmilChr06G001019| 统一新 Gene ID | SmilChr06G001019 |
|---|---|
| 名称 | SmilChr06G001019 |
| 描述 | uncharacterized SmilChr06G001019 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 10084481 - 10086508 / + |
| NCBI Gene ID | LOC130988552 |
|---|---|
| GeneID | 130988552 |
| locus_tag | - |
| NCBI Name | LOC130988552 |
| 原始查询 | SmilChr06G001019 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | tRNA/rRNA methyltransferase (SpoU) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816506]; symbol=AT2G19870; hit=AT2G19870; species=arabidopsis; confidence=high |
| 产物 | tRNA/rRNA methyltransferase (SpoU) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816506]; symbol=AT2G19870; hit=AT2G19870; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G19870 (AT2G19870)tRNA/rRNA methyltransferase (SpoU) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816506] identity=61.1; qcov=0.805; evalue=2.06e-164; confidence=high |
| Rice | Os01g0742000- identity=75.3; qcov=0.295; evalue=4.22e-65; confidence=weak |
| GO | GO:0003723 (RNA binding); GO:0008173 (RNA methyltransferase activity); GO:0009507 (chloroplast); GO:0031167 (rRNA methylation) |
| KEGG | - |
| Pfam | PF00588 (SpoU_methylase); PF08032 (SpoU_sub_bind) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988552 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057768418.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.80000 | XP_057768418.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057768418.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057768418.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057768418.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:10084884 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B23,B58,C5,D6 |
Chr6:10085030 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B50 |
Chr6:10085357 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C64,C66 |
Chr6:10085366 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B96 |
Chr6:10085451 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B41,B44,B46,C24 |
Chr6:10085857 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B81 |
Chr6:10085906 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr6:10085975 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B41,B44,B46,C24 |
Chr6:10086089 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B10,C82 |
Chr6:10086147 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
Chr6:10086307 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C29 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057768418.1PF08032
SpoU_sub_bind 226-310 aa
PF00588
SpoU_methylase 328-455 aa
XP_057768419.1PF08032
SpoU_sub_bind 226-310 aa
PF00588
SpoU_methylase 328-455 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768418.1 |
Pfam | PF08032 |
SpoU_sub_bind | Domain | 226 | 310 | 2.3e-10 | 41.4 | RNA 2'-O ribose methyltransferase substrate binding |
XP_057768418.1 |
Pfam | PF00588 |
SpoU_methylase | Family | 328 | 455 | 4.8e-28 | 98.8 | SpoU rRNA Methylase family |
XP_057768419.1 |
Pfam | PF08032 |
SpoU_sub_bind | Domain | 226 | 310 | 2.3e-10 | 41.4 | RNA 2'-O ribose methyltransferase substrate binding |
XP_057768419.1 |
Pfam | PF00588 |
SpoU_methylase | Family | 328 | 455 | 4.8e-28 | 98.8 | SpoU rRNA Methylase family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。