当前解析结果
SmilChr06G001073| 统一新 Gene ID | SmilChr06G001073 |
|---|---|
| 名称 | SmilChr06G001073 |
| 描述 | mitogen-activated protein kinase kinase kinase 5-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 10642877 - 10648034 / + |
| NCBI Gene ID | LOC130988595 |
|---|---|
| GeneID | 130988595 |
| locus_tag | - |
| NCBI Name | LOC130988595 |
| 原始查询 | SmilChr06G001073 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | mitogen-activated protein kinase kinase kinase 5-like |
| 产物 | mitogen-activated protein kinase kinase kinase 5-like |
| Arabidopsis | AT5G66850 (MAPKKK5)mitogen-activated protein kinase kinase kinase 5 [Source:NCBI gene (formerly Entrezgene);Acc:836819] identity=63.4; qcov=0.628; evalue=1.64e-146; confidence=high |
| Rice | Os03g0764300 (OsMAPKKK18)- identity=62.6; qcov=0.625; evalue=1.63e-138; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988595 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057768459.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057768459.1 |
| 3 | Cell membrane | 细胞膜 | 0.60000 | XP_057768461.1 |
| 4 | Nucleus | 细胞核 | 0.20000 | XP_057768459.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057768459.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:10643221 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A14,C12 |
Chr6:10644882 |
AT |
A |
1bp_deletion | frameshift_variant | 2 | B24,C8 |
Chr6:10644882 |
AT |
A |
1bp_deletion | CDS_variant | 2 | B24,C8 |
Chr6:10644893 |
AC |
A |
1bp_deletion | frameshift_variant | 2 | B24,C8 |
Chr6:10644893 |
AC |
A |
1bp_deletion | CDS_variant | 2 | B24,C8 |
Chr6:10644938 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr6:10645372 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:10645529 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A14,C12 |
Chr6:10645539 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A14,C12 |
Chr6:10646315 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr6:10646447 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | C53 |
Chr6:10646447 |
TG |
T |
1bp_deletion | CDS_variant | 1 | C53 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057768459.1PF00069
Pkinase 254-538 aa
PF07714
PK_Tyr_Ser-Thr 257-322 aa
PF07714
PK_Tyr_Ser-Thr 352-532 aa
XP_057768461.1PF00069
Pkinase 254-512 aa
PF07714
PK_Tyr_Ser-Thr 257-506 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768459.1 |
Pfam | PF00069 |
Pkinase | Domain | 254 | 538 | 7e-65 | 219.7 | Protein kinase domain |
XP_057768459.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 257 | 322 | 4.1e-40 | 138.4 | Protein tyrosine and serine/threonine kinase |
XP_057768459.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 352 | 532 | 4.1e-40 | 138.4 | Protein tyrosine and serine/threonine kinase |
XP_057768461.1 |
Pfam | PF00069 |
Pkinase | Domain | 254 | 512 | 1.2e-68 | 232.1 | Protein kinase domain |
XP_057768461.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 257 | 506 | 1.2e-44 | 153.2 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。