Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001085`

染色体: Chr06 坐标: 10850465-10854304 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001085`
名称	SmilChr06G001085
描述	protein DA1-related 1-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	10850465 - 10854304 / `+`

ID 对照

NCBI Gene ID	`LOC130988606`
GeneID	`130988606`
locus_tag	`-`
NCBI Name	`LOC130988606`
原始查询	`SmilChr06G001085`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein DA1-related 1-like
产物	protein DA1-related 1-like
Arabidopsis	`AT4G36860` (AT4G36860) LIM domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:829839] identity=60.9; qcov=1.16; evalue=0; confidence=high
Rice	`Os06g0182500` - identity=67.3; qcov=1.02; evalue=0; confidence=high
GO	GO:0043130 (ubiquitin binding)
KEGG	-
Pfam	PF00412 (LIM); PF12315 (DA1-like)
InterPro	-
eggNOG	-
NR	GeneID:130988606

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057768474.1`
2	Cytoplasm	细胞质	0.60000	`XP_057768474.1`
3	Cytosol	细胞质基质	0.60000	`XP_057768474.1`
4	Chromosome	染色体	0.00000	`XP_057768474.1`
5	Centromere	着丝粒	0.00000	`XP_057768474.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:10851487`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:10851850`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B137,B139,B32,C4,C48
`Chr6:10851877`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A4
`Chr6:10851914`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr6:10851961`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B130,C65
`Chr6:10852350`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B130,C65
`Chr6:10852507`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr6:10852805`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B86

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768474.1

483 aa

242

483

LIM

DA1-like

PF00412 LIM 119-174 aa PF12315 DA1-like 268-478 aa

XP_057768475.1

483 aa

242

483

LIM

DA1-like

PF00412 LIM 119-174 aa PF12315 DA1-like 268-478 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768474.1`	Pfam	`PF00412`	LIM	Domain	119	174	1.4e-12	48.3	LIM domain
`XP_057768474.1`	Pfam	`PF12315`	DA1-like	Family	268	478	5.2e-102	340.4	Protein DA1
`XP_057768475.1`	Pfam	`PF00412`	LIM	Domain	119	174	1.4e-12	48.3	LIM domain
`XP_057768475.1`	Pfam	`PF12315`	DA1-like	Family	268	478	5.2e-102	340.4	Protein DA1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057912492.1
ATACATTATTTCTATATCGACCAAATTAGTAATATAAAAATGTAACATATTATAGTAATTTTTTAAAAAAAAAAAGAAAAAAAGAAAAAAGAAAAAGAGAGAGGCAAAACCAGCCTCATTTTCACTAATCTTGCCTTTTTGTCAAATACAAAGGCTAACAATAGTGGGTTTTGACATTTAGTGACTGATGGTGTAAGAGTGGGACTAAAAGATATTTGCAACAGGCAGAATTTTATGATGGTTTGTCTGATTTGGGATTC...

XM_057912491.1
TCGACCAAATTAGTAATATAAAAATGTAACATATTATAGTAATTTTTTAAAAAAAAAAAGAAAAAAAGAAAAAAGAAAAAGAGAGAGGCAAAACCAGCCTCATTTTCACTAATCTTGCCTTTTTGTCAAATACAAAGGCTAACAATAGTGGGTTTTGACATTTAGTGACTGATGGTGTAAGAGTGGGACTAAAAGGTGAGGAAGGGTCCAGCTTCAGACAAGTACATAAAATCTTGAAATTGAATCATCCTATTCCTTGG...

CDS

2 records

下载 CDS FASTA

LOC130988606
ATGGGTTGGCTGACCAAGATTTTGAAAGGCTCCTCCAGTCACAAAATCTCAGAAGAGCATTATCATTGTGATCATGATGATGAAGTAACTTGGGAAGCAGCTCGTGTTTCGCGGGGCTCATCGGATTTCGACACAGAAGAGATTGACAGAGCAATCGCGCTTTCCATAGCTGAGGAAGATGAGAAAGGAAAGAAAGTGATAGATAGCGATTCTCAGTTAGAGGAAGACGAGCAGCTTGCTAAGGCGCTTCAAGAAAGTTT...

Protein

2 records

下载 Protein FASTA

XP_057768474.1
MGWLTKILKGSSSHKISEEHYHCDHDDEVTWEAARVSRGSSDFDTEEIDRAIALSIAEEDEKGKKVIDSDSQLEEDEQLAKALQESLNLESPPPSPPLREHGRLFAPFPFLDPSRYRTCAGCNSQIGNGRYLSCMGAVWHPDCFCCHACDKPISEIEFSMMDDRPYHKSCYMELHHPKCDVCKNFIPTNAAGLIEYRAHPFWPQKYCPSHEQDGTPRCCSCEKMEPVDATYLHLEDGRKLCLECLDSSIMDTHECQPLYL...

XP_057768475.1
MGWLTKILKGSSSHKISEEHYHCDHDDEVTWEAARVSRGSSDFDTEEIDRAIALSIAEEDEKGKKVIDSDSQLEEDEQLAKALQESLNLESPPPSPPLREHGRLFAPFPFLDPSRYRTCAGCNSQIGNGRYLSCMGAVWHPDCFCCHACDKPISEIEFSMMDDRPYHKSCYMELHHPKCDVCKNFIPTNAAGLIEYRAHPFWPQKYCPSHEQDGTPRCCSCEKMEPVDATYLHLEDGRKLCLECLDSSIMDTHECQPLYL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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