Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001091`

染色体: Chr06 坐标: 10905684-10906115 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001091`
名称	SmilChr06G001091
描述	uncharacterized SmilChr06G001091
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	10905684 - 10906115 / `-`

ID 对照

NCBI Gene ID	`LOC130990479`
GeneID	`130990479`
locus_tag	`-`
NCBI Name	`LOC130990479`
原始查询	`SmilChr06G001091`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816910]; symbol=AT2G23780; hit=AT2G23780; species=arabidopsis; confidence=medium
产物	RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816910]; symbol=AT2G23780; hit=AT2G23780; species=arabidopsis; confidence=medium
Arabidopsis	`AT2G23780` (AT2G23780) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816910] identity=59.5; qcov=0.517; evalue=3.64e-29; confidence=medium
Rice	`Os12g0636000` (OsRDCP5) - identity=45; qcov=0.762; evalue=4.59e-27; confidence=medium
GO	GO:0005783 (endoplasmic reticulum); GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0044390 (ubiquitin-like protein conjugating enzyme binding); GO:0046872 (metal ion binding); GO:0061630 (ubiquitin protein ligase activity); GO:0071712 (GO:0071712)
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF13639 (zf-RING_2); PF13920 (zf-C3HC4_3); PF13923 (zf-C3HC4_2)
InterPro	-
eggNOG	-
NR	GeneID:130990479

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.80000	`XP_057770693.1`
2	Endoplasmic reticulum membrane	内质网膜	0.60000	`XP_057770693.1`
3	Cell membrane	细胞膜	0.20000	`XP_057770693.1`
4	Nucleus	细胞核	0.00000	`XP_057770693.1`
5	Chromosome	染色体	0.00000	`XP_057770693.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:10905924`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B28,C82
`Chr6:10905966`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B56,B96

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770693.1

143 aa

143

zf-C3HC4_2

zf-RING_2

zf-C3HC4_3

zf-C3HC4

PF13923 zf-C3HC4_2 14-55 aa PF13639 zf-RING_2 14-56 aa PF13920 zf-C3HC4_3 14-60 aa PF00097 zf-C3HC4 15-55 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770693.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	14	55	6.1e-08	33.1	Zinc finger, C3HC4 type (RING finger)
`XP_057770693.1`	Pfam	`PF13639`	zf-RING_2	Domain	14	56	2.1e-06	28.6	Ring finger domain
`XP_057770693.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	14	60	7.1e-07	29.6	Zinc finger, C3HC4 type (RING finger)
`XP_057770693.1`	Pfam	`PF00097`	zf-C3HC4	Domain	15	55	3.4e-07	30.7	Zinc finger, C3HC4 type (RING finger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057914710.1
ATGGCAGCGGCGGACGAGGACGGCGAAACCGCCGGTTTCGAGTGCAATATCTGCTTCGGTTTAGCTCAAGATCCGGTGATTACCCGGTGCGGCCATCTCCATTGCTGGCCGTGCCTCTACGAGTGGCTGCGATTCCACTCGCAATGCCACGAATGCCCCGTTTGCAAGGCCGTGATCCGAGATGAGGAGCTCATTCCGCTCAATGGAAGGGGCGAAACGGCATTTCATCGGAGATTGATTCCTCGTCGGCGAATCAGCAG...

CDS

1 records

下载 CDS FASTA

LOC130990479
ATGGCAGCGGCGGACGAGGACGGCGAAACCGCCGGTTTCGAGTGCAATATCTGCTTCGGTTTAGCTCAAGATCCGGTGATTACCCGGTGCGGCCATCTCCATTGCTGGCCGTGCCTCTACGAGTGGCTGCGATTCCACTCGCAATGCCACGAATGCCCCGTTTGCAAGGCCGTGATCCGAGATGAGGAGCTCATTCCGCTCAATGGAAGGGGCGAAACGGCATTTCATCGGAGATTGATTCCTCGTCGGCGAATCAGCAG...

Protein

1 records

下载 Protein FASTA

XP_057770693.1
MAAADEDGETAGFECNICFGLAQDPVITRCGHLHCWPCLYEWLRFHSQCHECPVCKAVIRDEELIPLNGRGETAFHRRLIPRRRISRFAPAARVRFREFSGLNGYGSFGGGNGEVEEGNINGDNMKKIMFFILLFVVFDFLII

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器