当前解析结果
SmilChr06G001106| 统一新 Gene ID | SmilChr06G001106 |
|---|---|
| 名称 | SmilChr06G001106 |
| 描述 | uncharacterized SmilChr06G001106 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 11168014 - 11169755 / - |
| NCBI Gene ID | LOC130988626 |
|---|---|
| GeneID | 130988626 |
| locus_tag | - |
| NCBI Name | LOC130988626 |
| 原始查询 | SmilChr06G001106 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842644]; symbol=AT1G63380; hit=AT1G63380; species=arabidopsis; confidence=high |
| 产物 | NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842644]; symbol=AT1G63380; hit=AT1G63380; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G63380 (AT1G63380)NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842644] identity=55.3; qcov=1; evalue=3.16e-114; confidence=high |
| Rice | Os08g0510400- identity=57.1; qcov=0.961; evalue=3.42e-101; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF00106 (adh_short); PF01370 (Epimerase); PF08659 (KR); PF13561 (adh_short_C2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988626 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Peroxisome | 过氧化物酶体 | 0.80000 | XP_057768496.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057768496.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057768496.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057768496.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057768496.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:11168558 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C13 |
Chr6:11168587 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr6:11168601 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B98 |
Chr6:11168614 |
TCC |
T |
2bp_deletion | frameshift_variant | 32 | A7,A9,B111,B12,B121,B123,B129,B131,B135,B22,B23,B47,B54,B55,B56,B59,B6,B85,B86,B88,B9,B96,C13,C15,C2,C25,C36,C50,C57,C58,C67,C73 |
Chr6:11168693 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C11 |
Chr6:11169463 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A4 |
Chr6:11169516 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr6:11169536 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr6:11169542 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr6:11169615 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C22,C86 |
Chr6:11169687 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B14,B72,C29,C32,C76 |
Chr6:11169692 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057768496.1PF00106
adh_short 18-221 aa
PF01370
Epimerase 20-141 aa
PF08659
KR 20-188 aa
PF13561
adh_short_C2 24-272 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768496.1 |
Pfam | PF00106 |
adh_short | Domain | 18 | 221 | 1.9e-48 | 165.2 | short chain dehydrogenase |
XP_057768496.1 |
Pfam | PF01370 |
Epimerase | Family | 20 | 141 | 0.00014 | 22.0 | NAD dependent epimerase/dehydratase family |
XP_057768496.1 |
Pfam | PF08659 |
KR | Family | 20 | 188 | 2.2e-08 | 35.0 | KR domain |
XP_057768496.1 |
Pfam | PF13561 |
adh_short_C2 | Domain | 24 | 272 | 2.4e-41 | 142.6 | Enoyl-(Acyl carrier protein) reductase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。