当前解析结果
SmilChr06G001108| 统一新 Gene ID | SmilChr06G001108 |
|---|---|
| 名称 | SmilChr06G001108 |
| 描述 | protein trichome birefringence-like 19 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 11194463 - 11201518 / - |
| NCBI Gene ID | LOC130988628 |
|---|---|
| GeneID | 130988628 |
| locus_tag | - |
| NCBI Name | LOC130988628 |
| 原始查询 | SmilChr06G001108 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein trichome birefringence-like 19 |
| 产物 | protein trichome birefringence-like 19 |
| Arabidopsis | AT5G15900 (TBL19)TRICHOME BIREFRINGENCE-LIKE 19 [Source:NCBI gene (formerly Entrezgene);Acc:831447] identity=53.98; qcov=0.86; evalue=8.1e-169; confidence=high |
| Rice | Os01g0652800 (OsTBL57)- identity=51.14; qcov=0.818; evalue=5.01e-143; confidence=high |
| GO | GO:0005794 (Golgi apparatus); GO:0016413 (O-acetyltransferase activity) |
| KEGG | - |
| Pfam | PF13839 (PC-Esterase); PF14416 (PMR5N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988628 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:11194955 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
Chr6:11195053 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B53 |
Chr6:11195053 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B53 |
Chr6:11195061 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B128,C5 |
Chr6:11195100 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B21,B83,C30,C59 |
Chr6:11195142 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr6:11200890 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B137,B139,B32,C4,C48 |
Chr6:11201067 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B15 |
Chr6:11201068 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B61,C39 |
Chr6:11201201 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B134 |
Chr6:11201328 |
G |
GTT |
2bp_insertion | stop_gained,frameshift_variant | 3 | B2,B96,C23 |
Chr6:11201328 |
G |
GTT |
2bp_insertion | CDS_variant | 3 | B2,B96,C23 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057768498.1PF14416
PMR5N 119-172 aa
PF13839
PC-Esterase 173-455 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768498.1 |
Pfam | PF14416 |
PMR5N | Domain | 119 | 172 | 1.2e-21 | 77.5 | PMR5 N terminal Domain |
XP_057768498.1 |
Pfam | PF13839 |
PC-Esterase | Family | 173 | 455 | 2.3e-91 | 307.4 | GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。