当前解析结果
SmilChr06G001117| 统一新 Gene ID | SmilChr06G001117 |
|---|---|
| 名称 | SmilChr06G001117 |
| 描述 | S-adenosylmethionine decarboxylase proenzyme-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 11240322 - 11243031 / + |
| NCBI Gene ID | LOC130988638 |
|---|---|
| GeneID | 130988638 |
| locus_tag | - |
| NCBI Name | LOC130988638 |
| 原始查询 | SmilChr06G001117 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | S-adenosylmethionine decarboxylase proenzyme-like |
| 产物 | S-adenosylmethionine decarboxylase proenzyme-like |
| Arabidopsis | AT3G02470 (SAMDC)S-adenosylmethionine decarboxylase [Source:NCBI gene (formerly Entrezgene);Acc:821214] identity=60; qcov=0.825; evalue=3.66e-159; confidence=high |
| Rice | Os02g0611200 (SAMDC2)- identity=53.5; qcov=0.856; evalue=1.36e-130; confidence=high |
| GO | GO:0004014 (adenosylmethionine decarboxylase activity); GO:0005829 (cytosol); GO:0006597 (spermine biosynthetic process); GO:0008295 (spermidine biosynthetic process) |
| KEGG | smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil00330 (Arginine and proline metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01536 (SAM_decarbox); PF08132 (AdoMetDC_leader) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988638 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057768515.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057768515.1 |
| 3 | Cytosol | 细胞质基质 | 0.80000 | XP_057768515.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057768515.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057768515.1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057768515.1PF08132
AdoMetDC_leader 1-50 aa
PF01536
SAM_decarbox 60-383 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768515.1 |
Pfam | PF08132 |
AdoMetDC_leader | Family | 1 | 50 | 4.3e-30 | 104.1 | S-adenosyl-l-methionine decarboxylase leader peptide |
XP_057768515.1 |
Pfam | PF01536 |
SAM_decarbox | Family | 60 | 383 | 5e-114 | 381.7 | Adenosylmethionine decarboxylase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。