Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001134`

染色体: Chr06 坐标: 11387656-11391044 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001134`
名称	SmilChr06G001134
描述	uncharacterized SmilChr06G001134
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	11387656 - 11391044 / `-`

ID 对照

NCBI Gene ID	`LOC130988653`
GeneID	`130988653`
locus_tag	`-`
NCBI Name	`LOC130988653`
原始查询	`SmilChr06G001134`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ribosomal RNA-processing 7 protein [Source:NCBI gene (formerly Entrezgene);Acc:833863]; symbol=AT5G38720; hit=AT5G38720; species=arabidopsis; confidence=low
产物	ribosomal RNA-processing 7 protein [Source:NCBI gene (formerly Entrezgene);Acc:833863]; symbol=AT5G38720; hit=AT5G38720; species=arabidopsis; confidence=low
Arabidopsis	`AT5G38720` (AT5G38720) ribosomal RNA-processing 7 protein [Source:NCBI gene (formerly Entrezgene);Acc:833863] identity=65.8; qcov=0.438; evalue=5.21e-67; confidence=low
Rice	`Os02g0728700` - identity=65; qcov=0.462; evalue=9.37e-61; confidence=medium
GO	GO:0000028 (ribosomal small subunit assembly); GO:0006364 (rRNA processing); GO:0032545 (CURI complex); GO:0034456 (UTP-C complex)
KEGG	smil03008 (Ribosome biogenesis in eukaryotes - Salvia miltiorrhiza (redroot sage))
Pfam	PF12923 (RRP7)
InterPro	-
eggNOG	-
NR	GeneID:130988653

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057768532.1`
2	Nucleolus	核仁	1.00000	`XP_057768532.1`
3	Chromosome	染色体	0.00000	`XP_057768532.1`
4	Centromere	着丝粒	0.00000	`XP_057768532.1`
5	Chromatin	染色质	0.00000	`XP_057768532.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:11387864`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B12,B31,B89
`Chr6:11388313`	`CA`	`C`	1bp_deletion	frameshift_variant	7	A15,A16,B16,B41,B9,C23,C78
`Chr6:11388324`	`TAA`	`T`	2bp_deletion	frameshift_variant	3	A15,B9,C38
`Chr6:11388324`	`TAA`	`T`	2bp_deletion	CDS_variant	3	A15,B9,C38
`Chr6:11388361`	`A`	`AC`	1bp_insertion	frameshift_variant	6	A15,B109,B35,B41,B9,C41
`Chr6:11388456`	`C`	`CT`	1bp_insertion	frameshift_variant	4	B133,B46,B78,C20
`Chr6:11388456`	`C`	`CT`	1bp_insertion	CDS_variant	4	B133,B46,B78,C20
`Chr6:11388477`	`CA`	`C`	1bp_deletion	frameshift_variant	4	B122,B54,B9,C86
`Chr6:11388477`	`CA`	`C`	1bp_deletion	CDS_variant	4	B122,B54,B9,C86
`Chr6:11388548`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B101,B106,C82
`Chr6:11388564`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B125,C76,D9
`Chr6:11389626`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B114,B67,B68,B69

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768532.1

349 aa

174

349

RRP7

PF12923 RRP7 217-312 aa

XP_057768533.1

349 aa

174

349

RRP7

PF12923 RRP7 217-312 aa

XP_057768534.1

349 aa

174

349

RRP7

PF12923 RRP7 217-312 aa

XP_057768535.1

349 aa

174

349

RRP7

PF12923 RRP7 217-312 aa

XP_057768536.1

340 aa

170

340

RRP7

PF12923 RRP7 217-340 aa

XP_057768537.1

340 aa

170

340

RRP7

PF12923 RRP7 217-340 aa

XP_057768538.1

340 aa

170

340

RRP7

PF12923 RRP7 217-340 aa

XP_057768539.1

340 aa

170

340

RRP7

PF12923 RRP7 217-340 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768532.1`	Pfam	`PF12923`	RRP7	Domain	217	312	7.2e-14	52.6	Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain
`XP_057768533.1`	Pfam	`PF12923`	RRP7	Domain	217	312	7.2e-14	52.6	Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain
`XP_057768534.1`	Pfam	`PF12923`	RRP7	Domain	217	312	7.2e-14	52.6	Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain
`XP_057768535.1`	Pfam	`PF12923`	RRP7	Domain	217	312	7.2e-14	52.6	Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain
`XP_057768536.1`	Pfam	`PF12923`	RRP7	Domain	217	340	5.5e-27	95.0	Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain
`XP_057768537.1`	Pfam	`PF12923`	RRP7	Domain	217	340	5.5e-27	95.0	Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain
`XP_057768538.1`	Pfam	`PF12923`	RRP7	Domain	217	340	5.5e-27	95.0	Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain
`XP_057768539.1`	Pfam	`PF12923`	RRP7	Domain	217	340	5.5e-27	95.0	Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XM_057912553.1
TAAATGCATAATTCTTTAAAAAAAAGTTATTGGATGTTTATAATTTAACCCTATTAAAACCAACACTGCACGTTGAGTCGCAAACGCGTATCATATCCGAAACACTCAGCCGCCGCCGTGCCGCCGCCGTCGATTCTCGAAGCCGCTGTTCGGTTTGTCTCCAGAGTTAGTTCCACTTTCAGCGCAAGAAAATGGTTGTGGAGCTGACACAGAACAATAACGATAAGAGGAAGAAGATGAAGAAAAAGAAAGCTTCAAGT...

XM_057912550.1
TAAATGCATAATTCTTTAAAAAAAAGTTATTGGATGTTTATAATTTAACCCTATTAAAACCAACACTGCACGTTGAGTCGCAAACGCGTATCATATCCGAAACACTCAGCCGCCGCCGTGCCGCCGCCGTCGATTCTCGAAGCCGCTGTTCGGTTTGTCTCCAGAGTTAGTTCCACTTTCAGCGCAAGAAAATGGTTGTGGAGCTGACACAGAACAATAACGATAAGAGGAAGAAGATGAAGAAAAAGAAAGCTTCAAGT...

CDS

8 records

下载 CDS FASTA

LOC130988653
ATGGTTGTGGAGCTGACACAGAACAATAACGATAAGAGGAAGAAGATGAAGAAAAAGAAAGCTTCAAGTAATGTCAGAGTCGTTGCTGAGATGGTCGAAACTCGCCATGTGAAAGATGAAACACTTAAAACAAGTGGAGGAAAGAAAAAGAGTCAGAAATTGAGAGATAAAAAAAGAAAGAAGAGCGGAACAGCCCGAAGAGATGCTGAGGACGTTGTTCCCAGTCACGCCAACGAAATTGAAGATACAATTCCTAATAG...

Protein

8 records

下载 Protein FASTA

XP_057768532.1
MVVELTQNNNDKRKKMKKKKASSNVRVVAEMVETRHVKDETLKTSGGKKKSQKLRDKKRKKSGTARRDAEDVVPSHANEIEDTIPNRVYAEGEPSEEKLLKQRKKKRKNVESISHFDEFNDKNDASQECNDSKPEEYFTNSERISNGDATRKTKKGKSKNPERKKKKRPLVSNHISSDNLLETREGSVEEEDEVYQMSSGDEDYSRGMKKWITHYHQSRPGLKVLQERIDDFIMAHEAREEQAKAERLAQAAEGGWTVVV...

XP_057768533.1
MVVELTQNNNDKRKKMKKKKASSNVRVVAEMVETRHVKDETLKTSGGKKKSQKLRDKKRKKSGTARRDAEDVVPSHANEIEDTIPNRVYAEGEPSEEKLLKQRKKKRKNVESISHFDEFNDKNDASQECNDSKPEEYFTNSERISNGDATRKTKKGKSKNPERKKKKRPLVSNHISSDNLLETREGSVEEEDEVYQMSSGDEDYSRGMKKWITHYHQSRPGLKVLQERIDDFIMAHEAREEQAKAERLAQAAEGGWTVVV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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