Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001199`

染色体: Chr06 坐标: 12265461-12267279 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001199`
名称	SmilChr06G001199
描述	F-box/LRR-repeat/kelch-repeat protein At2g27520-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	12265461 - 12267279 / `+`

ID 对照

NCBI Gene ID	`LOC130988717`
GeneID	`130988717`
locus_tag	`-`
NCBI Name	`LOC130988717`
原始查询	`SmilChr06G001199`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/LRR-repeat/kelch-repeat protein At2g27520-like
产物	F-box/LRR-repeat/kelch-repeat protein At2g27520-like
Arabidopsis	`AT2G27520` (AT2G27520) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:817298] identity=24.1; qcov=0.852; evalue=2.85e-08; confidence=weak
Rice	`Os09g0448100` (OsFbox489) - identity=31; qcov=0.426; evalue=1.46e-12; confidence=low
GO	-
KEGG	-
Pfam	PF07734 (FBA_1); PF08268 (FBA_3)
InterPro	-
eggNOG	-
NR	GeneID:130988717

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057768627.1`
2	Cytoplasm	细胞质	0.80000	`XP_057768628.1`
3	Cytosol	细胞质基质	0.20000	`XP_057768628.1`
4	Endoplasmic reticulum	内质网	0.20000	`XP_057768628.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:12265726`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B52,B70,B71,C62
`Chr6:12265755`	`T`	`TA`	1bp_insertion	stop_gained,frameshift_variant	5	B137,B139,B32,C4,C48
`Chr6:12265755`	`T`	`TA`	1bp_insertion	CDS_variant	5	B137,B139,B32,C4,C48
`Chr6:12265759`	`TA`	`T`	1bp_deletion	frameshift_variant	1	C87
`Chr6:12265759`	`TA`	`T`	1bp_deletion	CDS_variant	1	C87
`Chr6:12265762`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B64,C43,C6
`Chr6:12265790`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B137,B139,B32,C4,C48
`Chr6:12265803`	`GA`	`G`	1bp_deletion	frameshift_variant	1	C87
`Chr6:12265803`	`GA`	`G`	1bp_deletion	CDS_variant	1	C87
`Chr6:12265819`	`ATT`	`A`	2bp_deletion	frameshift_variant	5	A19,A3,B130,C61,C65
`Chr6:12265819`	`ATT`	`A`	2bp_deletion	CDS_variant	5	A19,A3,B130,C61,C65
`Chr6:12265833`	`GAT`	`G`	2bp_deletion	frameshift_variant	3	B137,B139,C4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768627.1

375 aa

188

375

FBA_3

FBA_1

PF08268 FBA_3 18-246 aa PF07734 FBA_1 45-201 aa

XP_057768628.1

371 aa

186

371

FBA_3

FBA_1

PF08268 FBA_3 18-246 aa PF07734 FBA_1 45-201 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768627.1`	Pfam	`PF08268`	FBA_3	Repeat	18	246	4.4e-17	62.8	F-box associated beta propeller domain
`XP_057768627.1`	Pfam	`PF07734`	FBA_1	Repeat	45	201	2.3e-21	76.9	F-box associated beta propeller domain
`XP_057768628.1`	Pfam	`PF08268`	FBA_3	Repeat	18	246	4.1e-17	62.9	F-box associated beta propeller domain
`XP_057768628.1`	Pfam	`PF07734`	FBA_1	Repeat	45	201	2.2e-21	76.9	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057912645.1
ATTAATGTCTTTGCCAAAGATAACGAAACAAAAGAAAACAAAAGAAAAAGGGATTCGATTCTAAGCTTTGATTCGAGACTTCATCTTATTCACGACAAATTTATCGTCTAATTATAAGCTTCTTCTTCATTACAGTATTTCTCTGCCCTTTTCTATTTTTCTAATACACAAACATTTGTGAATATTTCTGAAATTGGTGTCTGTCGATGATGAATATTTGTGTTTTCTTTTTCTTGTTTTAGAATGGATGAGCTTTTTCT...

XM_057912644.1
ATGTCTTTGCCAAAGATAACGAAACAAAAGAAAACAAAAGAAAAAGGGATTCGATTCTAAGCTTTGATTCGAGACTTCATCTTATTCACGACAAATTTATCGTCTAATTATAAGCTTCTTCTTCATTACAGTATTTCTCTGCCCTTTTCTATTTTTCTAATACACAAACATTTGTGAATATTTCTGAAATTGGTGTCTGTCGATGATGAATATTTGTGTTTTCTTTTTCTTGTTTTAGAATGGATGAGCTTTTTCTGAAA...

CDS

2 records

下载 CDS FASTA

LOC130988717
ATGGATGAGCTTTTTCTGAAATCTTTTAACGGCGGTGGCGATAATGAGCATTATTTATCTATTATTTCTCCCCAAGACATACCTCCCAAGGAAGGTTTTGAAAATATCCATCTTTATTTTTATGATAAAGATAAAGAAAATGTTTCTGGTAATATTTGTGGTGGACTGTTGTATTTGGATGATTTTAATGGCAAAAGTGTTGTGTGCAACTTAGCAACTCAAGAGTTCAAATTTCTTCCTGCGCCCAAGAAACCCTCTCC...

Protein

2 records

下载 Protein FASTA

XP_057768627.1
MDELFLKSFNGGGDNEHYLSIISPQDIPPKEGFENIHLYFYDKDKENVSGNICGGLLYLDDFNGKSVVCNLATQEFKFLPAPKKPSPCLDDFHGSGLGFDSKSGDYKVIRSYTRCKCDPEDREGCRGGSHTKTELYSLQSDSWKEIPNPDAHTFPDCGVYIMGKCYWAVASEDGSSFSILSFDFSDESFSCIPSPPVSEKKFMYDLVECDGFLGAIVYEYKKPKHSKRGAKSYQLWVWKESWWAKSFGVALRGIESPLGL...

XP_057768628.1
MDELFLKSFNGGGDNEHYLSIISPQDIPPKEGFENIHLYFYDKDKENVSGNICGGLLYLDDFNGKSVVCNLATQEFKFLPAPKKPSPCLDDFHGSGLGFDSKSGDYKVIRSYTRCKCDPEDREGCRGGSHTKTELYSLQSDSWKEIPNPDAHTFPDCGVYIMGKCYWAVASEDGSSFSILSFDFSDESFSCIPSPPVSEKKFMYDLVECDGFLGAIVYEYKKPKHSKRGAKSYQLWVWKESWWAKSFGVALRGIESPLGL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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