Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001208`

染色体: Chr06 坐标: 12362148-12366041 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001208`
名称	SmilChr06G001208
描述	LRR receptor-like serine/threonine-protein kinase RPK2
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	12362148 - 12366041 / `+`

ID 对照

NCBI Gene ID	`LOC130988725`
GeneID	`130988725`
locus_tag	`-`
NCBI Name	`LOC130988725`
原始查询	`SmilChr06G001208`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	LRR receptor-like serine/threonine-protein kinase RPK2
产物	LRR receptor-like serine/threonine-protein kinase RPK2
Arabidopsis	`AT3G02130` (RPK2) receptor-like protein kinase 2 [Source:NCBI gene (formerly Entrezgene);Acc:821240] identity=61.3; qcov=1.02; evalue=0; confidence=high
Rice	`Os07g0602700` - identity=56.3; qcov=0.969; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:130988725

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057768641.1`
2	Nucleus	细胞核	0.00000	`XP_057768641.1`
3	Chromosome	染色体	0.00000	`XP_057768641.1`
4	Centromere	着丝粒	0.00000	`XP_057768641.1`
5	Chromatin	染色质	0.00000	`XP_057768641.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:12362465`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A15,B104,B9,C37,C38
`Chr6:12362540`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr6:12362753`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr6:12363101`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B52,B70,B71,C62
`Chr6:12363107`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B28,C27,D3
`Chr6:12363131`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A18,C72,C87,D4
`Chr6:12363325`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B113,B32,B91,C86,D4
`Chr6:12363365`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B24,C8
`Chr6:12363531`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B100,C29,C54
`Chr6:12363591`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	D10,D11
`Chr6:12363677`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C2,C32,C68
`Chr6:12363721`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	D10,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768641.1

1132 aa

566

1132

LRRNT_2

LRR_1

LRR_8

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 40-78 aa PF00560 LRR_1 159-181 aa PF13855 LRR_8 159-218 aa PF00560 LRR_1 183-205 aa PF00560 LRR_1 208-229 aa PF00560 LRR_1 256-278 aa PF00560 LRR_1 304-326 aa PF13855 LRR_8 393-434 aa PF00560 LRR_1 593-615 aa PF00560 LRR_1 617-639 aa PF00560 LRR_1 642-663 aa PF00560 LRR_1 665-687 aa PF00560 LRR_1 689-710 aa PF00069 Pkinase 855-1054 aa PF07714 PK_Tyr_Ser-Thr 856-1124 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768641.1`	Pfam	`PF08263`	LRRNT_2	Family	40	78	1.2e-12	48.6	Leucine rich repeat N-terminal domain
`XP_057768641.1`	Pfam	`PF00560`	LRR_1	Repeat	159	181	8.1e-42	132.9	Leucine Rich Repeat
`XP_057768641.1`	Pfam	`PF13855`	LRR_8	Repeat	159	218	2.5e-37	127.1	Leucine rich repeat
`XP_057768641.1`	Pfam	`PF00560`	LRR_1	Repeat	183	205	8.1e-42	132.9	Leucine Rich Repeat
`XP_057768641.1`	Pfam	`PF00560`	LRR_1	Repeat	208	229	8.1e-42	132.9	Leucine Rich Repeat
`XP_057768641.1`	Pfam	`PF00560`	LRR_1	Repeat	256	278	8.1e-42	132.9	Leucine Rich Repeat
`XP_057768641.1`	Pfam	`PF00560`	LRR_1	Repeat	304	326	8.1e-42	132.9	Leucine Rich Repeat
`XP_057768641.1`	Pfam	`PF13855`	LRR_8	Repeat	393	434	2.5e-37	127.1	Leucine rich repeat
`XP_057768641.1`	Pfam	`PF00560`	LRR_1	Repeat	593	615	8.1e-42	132.9	Leucine Rich Repeat
`XP_057768641.1`	Pfam	`PF00560`	LRR_1	Repeat	617	639	8.1e-42	132.9	Leucine Rich Repeat
`XP_057768641.1`	Pfam	`PF00560`	LRR_1	Repeat	642	663	8.1e-42	132.9	Leucine Rich Repeat
`XP_057768641.1`	Pfam	`PF00560`	LRR_1	Repeat	665	687	8.1e-42	132.9	Leucine Rich Repeat
`XP_057768641.1`	Pfam	`PF00560`	LRR_1	Repeat	689	710	8.1e-42	132.9	Leucine Rich Repeat
`XP_057768641.1`	Pfam	`PF00069`	Pkinase	Domain	855	1054	2.7e-42	145.7	Protein kinase domain
`XP_057768641.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	856	1124	1.5e-38	133.3	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057912658.1
AGAAAATTAATCTATAAAAAAGAAAAAGAAAAATGAAGAGCAACGCGTTTTCTCAAACAAAAAAACAAAGAATTGAAGAAACAACTCACTGTTCCTCTCTTTCTGTCCCTCTCTCCTCTTTACTGTTGGTAGACTCTGTGTCACGACTCCAATTTAAAAAATAGCAGCCCCAAATTAGGGCTAGGGTTAAGGCTTTGAGGTGTTTCCAAGAGAGAAGGAGAGGGAGACGAGGGAAGGGTCCGGCCGGAGCTTTTCGAGGA...

CDS

1 records

下载 CDS FASTA

LOC130988725
ATGGGTCGTTATTTCTTCATCGTGAAATGGCACCATCTCCACAACCACAAGCCGTTGAAGCTCTTGATTTTGCTATTGGTTTTGTTTTCAGCTCAAAATGGAGTGGTTCGGGGCTCCGATTCGGATAAATCTGCGCTTTTGGAGCTCAAGGCCTCAATTTCGGACCCGTACAGAGTGCTGAGCAGCTGGGGTTCGACAAACCTGAATCCCTGCTCGTGGGCAGGGGTTTCGTGCGGCCCGGGTTCGCGAGTTGTGGCGCT...

Protein

1 records

下载 Protein FASTA

XP_057768641.1
MGRYFFIVKWHHLHNHKPLKLLILLLVLFSAQNGVVRGSDSDKSALLELKASISDPYRVLSSWGSTNLNPCSWAGVSCGPGSRVVALNITGGGNSLSCARIAQFPLYGFGIRRNCLDGNRKILGKLSAAVAKLSELKILSLPFNELSGEIPAEIWGMGKLEVLDLEGNLISGTLPSRFSGLRNLKVLNLGFNKISGGMPTSLSNCMGLRVLNLAGNQLNGSIPGFVGGLRDLSGLHLSFNLLRGSIPVEIGDNCVKLQHL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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