Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001223`

染色体: Chr06 坐标: 12626675-12632494 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001223`
名称	SmilChr06G001223
描述	vesicle transport v-SNARE 13-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	12626675 - 12632494 / `-`

ID 对照

NCBI Gene ID	`LOC130988740`
GeneID	`130988740`
locus_tag	`-`
NCBI Name	`LOC130988740`
原始查询	`SmilChr06G001223`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	vesicle transport v-SNARE 13-like
产物	vesicle transport v-SNARE 13-like
Arabidopsis	`AT3G29100` (VTI13) vesicle transport V-snare 13 [Source:NCBI gene (formerly Entrezgene);Acc:822557] identity=70.1; qcov=1; evalue=4.33e-113; confidence=high
Rice	`Os01g0707300` (P0692C11.36-1) - identity=70; qcov=0.995; evalue=1.04e-107; confidence=high
GO	GO:0000149 (SNARE binding); GO:0005484 (SNAP receptor activity); GO:0005789 (endoplasmic reticulum membrane); GO:0005794 (Golgi apparatus); GO:0006886 (intracellular protein transport); GO:0006906 (vesicle fusion); GO:0012507 (ER to Golgi transport vesicle membrane); GO:0016192 (vesicle-mediated transport); GO:0031201 (SNARE complex); GO:0031902 (late endosome membrane)
KEGG	smil04130 (SNARE interactions in vesicular transport - Salvia miltiorrhiza (redroot sage))
Pfam	PF05008 (V-SNARE); PF12352 (V-SNARE_C)
InterPro	-
eggNOG	-
NR	GeneID:130988740

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057768664.1`
2	Trans-golgi network	Trans-golgi network	1.00000	`XP_057768664.1`
3	Vacuole	液泡	0.80000	`XP_057768664.1`
4	Vacuole membrane	液泡膜	0.80000	`XP_057768664.1`
5	Cytoplasmic vesicle	细胞质囊泡	0.40000	`XP_057768664.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:12626940`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A15,B9,C38
`Chr6:12627614`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B26,B80,C40

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768664.1

221 aa

110

221

V-SNARE

V-SNARE_C

PF05008 V-SNARE 1-91 aa PF12352 V-SNARE_C 128-193 aa

XP_057768666.1

221 aa

110

221

V-SNARE

V-SNARE_C

PF05008 V-SNARE 1-91 aa PF12352 V-SNARE_C 128-193 aa

XP_057768667.1

221 aa

110

221

V-SNARE

V-SNARE_C

PF05008 V-SNARE 1-91 aa PF12352 V-SNARE_C 128-193 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768664.1`	Pfam	`PF05008`	V-SNARE	Domain	1	91	8.6e-31	107.0	Vesicle transport v-SNARE protein N-terminus
`XP_057768664.1`	Pfam	`PF12352`	V-SNARE_C	Domain	128	193	7.9e-20	71.6	Snare region anchored in the vesicle membrane C-terminus
`XP_057768666.1`	Pfam	`PF05008`	V-SNARE	Domain	1	91	8.6e-31	107.0	Vesicle transport v-SNARE protein N-terminus
`XP_057768666.1`	Pfam	`PF12352`	V-SNARE_C	Domain	128	193	7.9e-20	71.6	Snare region anchored in the vesicle membrane C-terminus
`XP_057768667.1`	Pfam	`PF05008`	V-SNARE	Domain	1	91	8.6e-31	107.0	Vesicle transport v-SNARE protein N-terminus
`XP_057768667.1`	Pfam	`PF12352`	V-SNARE_C	Domain	128	193	7.9e-20	71.6	Snare region anchored in the vesicle membrane C-terminus

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057912684.1
ATAGAATGGTAAAACTAAAAACCTTTTTTCTTTGTTCAAAGAAAGAAAAATAGAGAAAATATAAAAAGTAGAAATCTTGAACGATAAATTGGAACCGCGGAATAACAGAATAGTTTCGTGAACGAAACCCCCGAAATTCAACCCACTTTTCTTAATTGATTCGAATTACAAACACTGATTTTGGACCAGATTTTTCAGTTAGGAAGGTGACGATGAGCGCCGTATTTGAAGGTTACGAAAAACAATACTGCGAGCTCTCT...

XM_057912683.1
AAAACTAAAAACCTTTTTTCTTTGTTCAAAGAAAGAAAAATAGAGAAAATATAAAAAGTAGAAATCTTGAACGATAAATTGGAACCGCGGAATAACAGAATAGTTTCGTGAACGAAACCCCCGAAATTCAACCCACTTTTCTTAATTGATTCGAATTACAAACACTGATTTTGGACCAGATTTTTCAGGAAGGTGACGATGAGCGCCGTATTTGAAGGTTACGAAAAACAATACTGCGAGCTCTCTGCGAATTTGTCGAA...

CDS

3 records

下载 CDS FASTA

LOC130988740
ATGAGCGCCGTATTTGAAGGTTACGAAAAACAATACTGCGAGCTCTCTGCGAATTTGTCGAAGAAGTGTGCGTCGGCCAACCTACTCGATGGAGAGCAAAAGAAGCAAAAGATTTCTGAAATTAAAGTTGGATTGGATGAGGCAGAAGCACTGATTAGGAAGATGGATCTGGAGGCTCGTGCCTTGCAGCCAAATATTAAGGTAGTGCTTCTTGCTAAGTTGAGAGAGTATAAGTCTGATCTGAACAATTTGAAAAGTGA...

Protein

3 records

下载 Protein FASTA

XP_057768664.1
MSAVFEGYEKQYCELSANLSKKCASANLLDGEQKKQKISEIKVGLDEAEALIRKMDLEARALQPNIKVVLLAKLREYKSDLNNLKSEVKRIASTNLNQAARDELLEAGLADTLAVSANQRDRLLTATERLDNSSNRIRDSRKVMLETEELGVSLLQDLHQQRQSLSHADNTLNGVDNNIGRSKKILTNMSRRMNRNKWMIGGVITVLVIAIALILYFKLAK

XP_057768666.1
MSAVFEGYEKQYCELSANLSKKCASANLLDGEQKKQKISEIKVGLDEAEALIRKMDLEARALQPNIKVVLLAKLREYKSDLNNLKSEVKRIASTNLNQAARDELLEAGLADTLAVSANQRDRLLTATERLDNSSNRIRDSRKVMLETEELGVSLLQDLHQQRQSLSHADNTLNGVDNNIGRSKKILTNMSRRMNRNKWMIGGVITVLVIAIALILYFKLAK

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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