Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001232`

染色体: Chr06 坐标: 12712686-12717358 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001232`
名称	SmilChr06G001232
描述	protein IMPAIRED IN BABA-INDUCED STERILITY 1-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	12712686 - 12717358 / `-`

ID 对照

NCBI Gene ID	`LOC130988748`
GeneID	`130988748`
locus_tag	`-`
NCBI Name	`LOC130988748`
原始查询	`SmilChr06G001232`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein IMPAIRED IN BABA-INDUCED STERILITY 1-like
产物	protein IMPAIRED IN BABA-INDUCED STERILITY 1-like
Arabidopsis	`AT1G74330` (AT1G74330) Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843774] identity=66.6; qcov=0.651; evalue=0; confidence=high
Rice	`Os07g0596600` (Orysa) - identity=60.9; qcov=0.758; evalue=0; confidence=high
GO	GO:0000307 (cyclin-dependent protein kinase holoenzyme complex); GO:0004693 (cyclin-dependent protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0006468 (protein phosphorylation); GO:0008353 (RNA polymerase II CTD heptapeptide repeat kinase activity); GO:0032968 (positive regulation of transcription elongation by RNA polymerase II)
KEGG	-
Pfam	PF00069 (Pkinase); PF03109 (ABC1); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:130988748

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057768675.1`
2	Cell membrane	细胞膜	0.80000	`XP_057768675.1`
3	Cytoplasm	细胞质	0.60000	`XP_057768675.1`
4	Nucleus	细胞核	0.00000	`XP_057768675.1`
5	Chromosome	染色体	0.00000	`XP_057768675.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:12713238`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B106,B17,B53,D11,D4
`Chr6:12714169`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:12714206`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A3
`Chr6:12714395`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B106,B17,B53,D11
`Chr6:12714416`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B128,C19
`Chr6:12714619`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B122,B140,B78,C5,C71
`Chr6:12714629`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A19,A3,B130,C61,C65
`Chr6:12716679`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr6:12716768`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B33,C82,C9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768675.1

598 aa

299

598

Pkinase

PK_Tyr_Ser-Thr

ABC1

PF00069 Pkinase 135-419 aa PF07714 PK_Tyr_Ser-Thr 137-345 aa PF03109 ABC1 202-298 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768675.1`	Pfam	`PF00069`	Pkinase	Domain	135	419	7.7e-68	229.4	Protein kinase domain
`XP_057768675.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	137	345	5.4e-33	115.1	Protein tyrosine and serine/threonine kinase
`XP_057768675.1`	Pfam	`PF03109`	ABC1	Domain	202	298	1.6e-06	28.2	ABC1 atypical kinase-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XR_009090196.1
ATATTAAAGCTCACATACATAAGTAATCCAGAAATAGTACGGTATAACAGAATTTGCAACAAAGCTTAACAATGATTGGACAAACGAAAAATGCCAATGAATATCGGCCTTTCCCCCTCCGCACACAACGCGAAGAAGAAACAACAAAAATGGACACCAAACATTTCTCGATTCTCCTTGCTTCCACACTCTCACACGCGCACACTCTCTCTCTCCTCCGCACCTTCTCAAGAGAAATTTAATTTACAAAGCTCATATAT...

XM_057912692.1
ATATTAAAGCTCACATACATAAGTAATCCAGAAATAGTACGGTATAACAGAATTTGCAACAAAGCTTAACAATGATTGGACAAACGAAAAATGCCAATGAATATCGGCCTTTCCCCCTCCGCACACAACGCGAAGAAGAAACAACAAAAATGGACACCAAACATTTCTCGATTCTCCTTGCTTCCACACTCTCACACGCGCACACTCTCTCTCTCCTCCGCACCTTCTCAAGAGAAATTTAATTTACAAAGCTCATATAT...

CDS

1 records

下载 CDS FASTA

LOC130988748
ATGGGTTGCATTAGCTCAAAGAGTGCAAGCTCCGAGTCTCCCGAATACCAACGCCGTTCATCATCATCAGCCTCGTCTCGGCGGCGGAGGAGCAATGGCCGGCGGCGCTCGTCGTCTCTGCTGCACAGCACCATGTCGTACGGGCCGCTGGAGGGAATAAAGGAGGAGCCGGAGAAGGAGGAAGGGCTGGAGGAGGAAGAGGATGAGGTGCACCTCCAAGTGAGGAAGGACGGGAGTTCAAAGGGAGCTTCTTCTTCGTC...

Protein

1 records

下载 Protein FASTA

XP_057768675.1
MGCISSKSASSESPEYQRRSSSSASSRRRRSNGRRRSSSLLHSTMSYGPLEGIKEEPEKEEGLEEEEDEVHLQVRKDGSSKGASSSSSHKKAALFGFRFGRLTEGEQVAAGWPSWLSAAAGEAIQGWLPLRSDSFKRLEKIGQGTYSEVYRARNVESGRIVAVKKVRFDSFQADSVRFMAREIRILRRLDHPNVMKLEGIIASKLSTHVYLVFDYMEHDLAGLVSCPDIKFTDSQIKCYMKQLLSGLEHCHSRGILHRDI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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