Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001237`

染色体: Chr06 坐标: 12750540-12772821 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001237`
名称	SmilChr06G001237
描述	chorismate mutase 1, chloroplastic
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	12750540 - 12772821 / `-`

ID 对照

NCBI Gene ID	`LOC130988759`
GeneID	`130988759`
locus_tag	`-`
NCBI Name	`LOC130988759`
原始查询	`SmilChr06G001237`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	chorismate mutase 1, chloroplastic
产物	chorismate mutase 1%2C chloroplastic
Arabidopsis	`AT3G29185` (AT3G29185) glutamate NMDA receptor subunit epsilon-1, putative (DUF3598) [Source:NCBI gene (formerly Entrezgene);Acc:822570] identity=71.7; qcov=0.571; evalue=2.83e-160; confidence=medium
Rice	`Os03g0758900` (OsWRKY4) - identity=65.3; qcov=0.562; evalue=4.42e-145; confidence=medium
GO	GO:0004106 (chorismate mutase activity); GO:0009073 (aromatic amino acid biosynthetic process); GO:0010020 (chloroplast fission); GO:0046417 (chorismate metabolic process)
KEGG	-
Pfam	PF01817 (CM_2); PF12204 (DUF3598_N); PF21053 (BFA1_C)
InterPro	-
eggNOG	-
NR	GeneID:130988759

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057768696.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057768696.1`
3	Cytosol	细胞质基质	0.80000	`XP_057768697.1`
4	Cytoplasm	细胞质	0.40000	`XP_057768697.1`
5	Nucleus	细胞核	0.00000	`XP_057768696.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:12751077`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B62
`Chr6:12751100`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B113,B32,B91,C86
`Chr6:12755449`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C5
`Chr6:12755552`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B10,B104
`Chr6:12756839`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B118,B122,C37
`Chr6:12757390`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B90,B92
`Chr6:12757423`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A7,B30
`Chr6:12757448`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C4,C83,D10
`Chr6:12757472`	`G`	`A`	EMS_canonical_SNV	stop_gained	10	A21,B105,B112,B119,B13,B18,B61,C29,C5,C75
`Chr6:12769939`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr6:12769962`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C76
`Chr6:12769962`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C76

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768696.1

623 aa

312

623

CM_2

DUF3598_N

BFA1_C

PF01817 CM_2 200-313 aa PF12204 DUF3598_N 313-467 aa PF21053 BFA1_C 489-622 aa

XP_057768697.1

564 aa

282

564

CM_2

DUF3598_N

BFA1_C

PF01817 CM_2 141-254 aa PF12204 DUF3598_N 254-408 aa PF21053 BFA1_C 430-563 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768696.1`	Pfam	`PF01817`	CM_2	Domain	200	313	2.7e-08	34.6	Chorismate mutase type II
`XP_057768696.1`	Pfam	`PF12204`	DUF3598_N	Domain	313	467	8e-13	49.7	Domain of unknown function (DUF3598), N-terminal
`XP_057768696.1`	Pfam	`PF21053`	BFA1_C	Domain	489	622	8.6e-15	55.6	Biogenesis factor required for ATP synthase 1, C-terminal domain
`XP_057768697.1`	Pfam	`PF01817`	CM_2	Domain	141	254	2.3e-08	34.9	Chorismate mutase type II
`XP_057768697.1`	Pfam	`PF12204`	DUF3598_N	Domain	254	408	5.8e-13	50.1	Domain of unknown function (DUF3598), N-terminal
`XP_057768697.1`	Pfam	`PF21053`	BFA1_C	Domain	430	563	8.1e-15	55.6	Biogenesis factor required for ATP synthase 1, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057912713.1
ATACTCAAATCCAATCTTATTTTCTGGACAACTGAATCCGTTTCTTCAGTCGCATATTTACTAGTGACGGAACTCTTCTTTATATGGATCTGTCCAGATAAACACAACTTTTTGTTAATACAATTGTTGTCTTTGCCAAAAAAAAAAAAATATAGTACAATTGTTGTAATAAATGGAAGCTAAGCTGCTCGAAGCCGCCTCCTCCGCCGCCCTCCGCCACCTTAGTTCCGATATCCCAAAGCCCACTCGCCTCTTTCCAG...

XM_057912714.1
TTGTTTTATAATTTGGCGATGATAATTTTCTCTGGTTGAAGACTCTTACTACTTTCTTGTTAGATATGCAGTGCTCATGAATTAAACATTTCTTCTAAATTTGTTTTTTTTTTTTTTTTTTTTTTTTTGGGAGGCATTTCTTTTAAAATTGTTTTATTAATTACATGTAAGCATTTCATTCTGTGAAAATTTTATTTAGGGATCCAATTTTTGAATGTTTTAGTCTTACATTTATCTTAGCTATTTAATTGTACTAGACC...

CDS

2 records

下载 CDS FASTA

LOC130988759
ATGGAAGCTAAGCTGCTCGAAGCCGCCTCCTCCGCCGCCCTCCGCCACCTTAGTTCCGATATCCCAAAGCCCACTCGCCTCTTTCCAGATCAAACATCTTCCCGCCTTCAATTTCCCAGTTCGAGATTTCTCAGTAATGGCAATCTCACAAATCAAGCTTCTTCCGCTTCTGCGGTTGGGTATACACAGAAGAAAAGGGTAGACGAGTCGCAGATGTACACTCTTGAGGGCATTAGGAGCTCCTTGATACGACAAGAAGA...

LOC130988759
ATGTATACACAGAAGAAAAGGGTAGACGAGTCGCAGATGTACACTCTTGAGGGCATTAGGAGCTCCTTGATACGACAAGAAGAGAGCATTATATTCAGTCTGGTAGAGAGAGCTCAATTTTGTTATAATGCGGCAACATATGATCCTGATGCTTTTGCTATAGATGGTTTCCATGGCTCTTTAGTCGAGTACATGGTCAAAGAAACAGAAAAGCTTCATGCCAATGCCGGAAGATACAAGAGCCCCGATGAGCATCCATT...

Protein

2 records

下载 Protein FASTA

XP_057768696.1
MEAKLLEAASSAALRHLSSDIPKPTRLFPDQTSSRLQFPSSRFLSNGNLTNQASSASAVGYTQKKRVDESQMYTLEGIRSSLIRQEESIIFSLVERAQFCYNAATYDPDAFAIDGFHGSLVEYMVKETEKLHANAGRYKSPDEHPFFPDDLPEPLLPPLEYPQVLHSAADVININVRVWNMYFRNLLPRLVKEGDDGNYGSAATCDTLCLQTLSKRIHYGKFVAEAKFRASPDVYKAAIRAQDGAQLMDLLTYATVEEAI...

XP_057768697.1
MYTQKKRVDESQMYTLEGIRSSLIRQEESIIFSLVERAQFCYNAATYDPDAFAIDGFHGSLVEYMVKETEKLHANAGRYKSPDEHPFFPDDLPEPLLPPLEYPQVLHSAADVININVRVWNMYFRNLLPRLVKEGDDGNYGSAATCDTLCLQTLSKRIHYGKFVAEAKFRASPDVYKAAIRAQDGAQLMDLLTYATVEEAITKRVELKTRKHGQEVSAAAGDQDNIEPVYKINPTIVAELYCEWIMPLTKQVQQFDCNGN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器