Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001241`

染色体: Chr06 坐标: 12796822-12805597 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001241`
名称	SmilChr06G001241
描述	uncharacterized SmilChr06G001241
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	12796822 - 12805597 / `+`

ID 对照

NCBI Gene ID	`LOC130988787`
GeneID	`130988787`
locus_tag	`-`
NCBI Name	`LOC130988787`
原始查询	`SmilChr06G001241`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os08g0315200; species=rice; confidence=medium
产物	hit=Os08g0315200; species=rice; confidence=medium
Arabidopsis	`-` -
Rice	`Os08g0315200` - identity=36.7; qcov=0.475; evalue=2.3e-27; confidence=medium
GO	GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF00098 (zf-CCHC); PF03732 (PEG10_N-capsid); PF19259 (Ty3_capsid)
InterPro	-
eggNOG	-
NR	GeneID:130988787

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057768730.1`
2	Nucleus	细胞核	0.60000	`XP_057768730.1`
3	Cytosol	细胞质基质	0.40000	`XP_057768730.1`
4	Nucleoplasm	核质	0.20000	`XP_057768730.1`
5	Cytoplasmic granule	细胞质颗粒	0.20000	`XP_057768730.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:12801414`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A24,B113,B130,B33,B76
`Chr6:12801495`	`GC`	`G`	1bp_deletion	frameshift_variant	4	B12,C11,C35,C69
`Chr6:12801495`	`GC`	`G`	1bp_deletion	CDS_variant	4	B12,C11,C35,C69
`Chr6:12801511`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B41,B59
`Chr6:12801552`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C4
`Chr6:12801580`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B93,C53
`Chr6:12801598`	`T`	`TG`	1bp_insertion	frameshift_variant	1	C4
`Chr6:12801598`	`T`	`TG`	1bp_insertion	CDS_variant	1	C4
`Chr6:12801600`	`G`	`A`	EMS_canonical_SNV	stop_gained	3	B127,B74,D2
`Chr6:12801600`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B127,B74,D2
`Chr6:12801608`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B130
`Chr6:12801613`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B95

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768730.1

356 aa

178

356

Ty3_capsid

PEG10_N-capsid

zf-CCHC

PF19259 Ty3_capsid 39-209 aa PF03732 PEG10_N-capsid 46-125 aa PF00098 zf-CCHC 285-302 aa

XP_057768731.1

356 aa

178

356

Ty3_capsid

PEG10_N-capsid

zf-CCHC

PF19259 Ty3_capsid 39-209 aa PF03732 PEG10_N-capsid 46-125 aa PF00098 zf-CCHC 285-302 aa

XP_057768732.1

356 aa

178

356

Ty3_capsid

PEG10_N-capsid

zf-CCHC

PF19259 Ty3_capsid 39-209 aa PF03732 PEG10_N-capsid 46-125 aa PF00098 zf-CCHC 285-302 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768730.1`	Pfam	`PF19259`	Ty3_capsid	Domain	39	209	6.5e-12	46.0	Ty3 transposon capsid-like protein
`XP_057768730.1`	Pfam	`PF03732`	PEG10_N-capsid	Domain	46	125	7.2e-14	52.6	Retrotransposon-derived protein PEG10, N-terminal capsid-like domain
`XP_057768730.1`	Pfam	`PF00098`	zf-CCHC	Domain	285	302	4.2e-05	24.1	Zinc knuckle
`XP_057768731.1`	Pfam	`PF19259`	Ty3_capsid	Domain	39	209	6.5e-12	46.0	Ty3 transposon capsid-like protein
`XP_057768731.1`	Pfam	`PF03732`	PEG10_N-capsid	Domain	46	125	7.2e-14	52.6	Retrotransposon-derived protein PEG10, N-terminal capsid-like domain
`XP_057768731.1`	Pfam	`PF00098`	zf-CCHC	Domain	285	302	4.2e-05	24.1	Zinc knuckle
`XP_057768732.1`	Pfam	`PF19259`	Ty3_capsid	Domain	39	209	6.5e-12	46.0	Ty3 transposon capsid-like protein
`XP_057768732.1`	Pfam	`PF03732`	PEG10_N-capsid	Domain	46	125	7.2e-14	52.6	Retrotransposon-derived protein PEG10, N-terminal capsid-like domain
`XP_057768732.1`	Pfam	`PF00098`	zf-CCHC	Domain	285	302	4.2e-05	24.1	Zinc knuckle

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057912747.1
TTAGTATCACTTGAACCTTTCAACGTATATTTTATTTCAAATTATGTTGGATGAATCATCAACTCTTTATTTCAAACTAGTATGATTTTTATACATTTCGGGCTAATATGCATTTTTTTTAAAAGCCCATTAGTTGATATGAGCAAAGGCCCAATTCCTTTTGTCAAGAATCATGTGCAAGGGAAAAGGAAATCTTAGATATTTTCGCAGTGAGGTTTAATTATCTAAATCCTAGTTCATGAGATATGGCTCCCAAAAGG...

XM_057912749.1
TTAGTATCACTTGAACCTTTCAACGTATATTTTATTTCAAATTATGTTGGATGAATCATCAACTCTTTATTTCAAACTAGTATGATTTTTATACATTTCGGGCTAATATGCATTTTTTTTAAAAGCCCATTAGTTGATATGAGCAAAGGCCCAATTCCTTTTGTCAAGAATCATGTGCAAGGGAAAAGGAAATCTTAGATATTTTCGCAGTGAGGTTTAATTATCTAAATCCTAGTTCATGAGATATGGCTCCCAAAAGG...

CDS

3 records

下载 CDS FASTA

LOC130988787
ATGGACATGGAAACAAGAGGACGTGGACGAGGAAGAGGACGTGGACGAGGACGAGGACGAGGACGAGGAATTGCCCCGGAGCAGCCTGCACCACAAGTAGCACCAAATCGTTCAGCAATGGAAAGATTTCGCAAAGAGAAGCCACCTACATTTGATGGTTTAGGCGACCCTACGGATGTCGAGAAATGGATTAGAGCAATAGAACGAATTTTTAACTACATCCGCTGTGAAGATGAAGAAAAGATAATATGCGCCACCTA...

Protein

3 records

下载 Protein FASTA

XP_057768730.1
MDMETRGRGRGRGRGRGRGRGRGIAPEQPAPQVAPNRSAMERFRKEKPPTFDGLGDPTDVEKWIRAIERIFNYIRCEDEEKIICATYQLVDEADFWWESVRRTMTDEQWENFTWDDFKAELYEKYIPGCYRQKKQNEFWNLKQRNGTVTEYDRAFNQLSRYAPHLVDTDEKRAERFRNGLRPEISISLASQGGLTYAQTLSRALTIESLLPREKGKAPAQFEHASYPNNEKGKRKWNEKDFENEKKPWTENWNQNQPQQQ...

XP_057768731.1
MDMETRGRGRGRGRGRGRGRGRGIAPEQPAPQVAPNRSAMERFRKEKPPTFDGLGDPTDVEKWIRAIERIFNYIRCEDEEKIICATYQLVDEADFWWESVRRTMTDEQWENFTWDDFKAELYEKYIPGCYRQKKQNEFWNLKQRNGTVTEYDRAFNQLSRYAPHLVDTDEKRAERFRNGLRPEISISLASQGGLTYAQTLSRALTIESLLPREKGKAPAQFEHASYPNNEKGKRKWNEKDFENEKKPWTENWNQNQPQQQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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