当前解析结果
SmilChr06G001242| 统一新 Gene ID | SmilChr06G001242 |
|---|---|
| 名称 | SmilChr06G001242 |
| 描述 | secreted RxLR effector protein 161-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 12809056 - 12809754 / + |
| NCBI Gene ID | LOC130990508 |
|---|---|
| GeneID | 130990508 |
| locus_tag | - |
| NCBI Name | LOC130990508 |
| 原始查询 | SmilChr06G001242 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | secreted RxLR effector protein 161-like |
| 产物 | secreted RxLR effector protein 161-like |
| Arabidopsis | AT4G23160 (CRK8)cysteine-rich RECEPTOR-like kinase [Source:NCBI gene (formerly Entrezgene);Acc:828415] identity=35.6; qcov=0.776; evalue=3.39e-30; confidence=medium |
| Rice | Os11g0656500- identity=39.6; qcov=0.914; evalue=6.46e-40; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990508 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057770721.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057770721.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057770721.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057770721.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057770721.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:12809061 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr6:12809119 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr6:12809122 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr6:12809153 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B103,B132,B68,C55 |
Chr6:12809167 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
Chr6:12809215 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | C39 |
Chr6:12809215 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr6:12809349 |
A |
AG |
1bp_insertion | frameshift_variant | 1 | C25 |
Chr6:12809349 |
A |
AG |
1bp_insertion | CDS_variant | 1 | C25 |
Chr6:12809377 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B64,C16 |
Chr6:12809377 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B64,C16 |
Chr6:12809428 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C21,C46,C67 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。