当前解析结果
SmilChr06G001254| 统一新 Gene ID | SmilChr06G001254 |
|---|---|
| 名称 | SmilChr06G001254 |
| 描述 | uncharacterized SmilChr06G001254 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 13045157 - 13049123 / - |
| NCBI Gene ID | LOC130990511 |
|---|---|
| GeneID | 130990511 |
| locus_tag | - |
| NCBI Name | LOC130990511 |
| 原始查询 | SmilChr06G001254 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0202300; species=rice; confidence=weak |
| 产物 | hit=Os08g0202300; species=rice; confidence=weak |
| Arabidopsis | AT5G51080 (AT5G51080)RNase H family protein [Source:NCBI gene (formerly Entrezgene);Acc:835181] identity=28.6; qcov=0.075; evalue=8.21e-06; confidence=weak |
| Rice | Os08g0202300- identity=38.5; qcov=0.161; evalue=3.41e-33; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990511 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057770724.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057770724.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057770724.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057770724.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057770724.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:13045169 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B131,C20 |
Chr6:13045331 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr6:13045346 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B123,B35,B38,B39,C14 |
Chr6:13045352 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B7,B91 |
Chr6:13045352 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B7,B91 |
Chr6:13045362 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr6:13045364 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C41,C63 |
Chr6:13045393 |
ACC |
A |
2bp_deletion | frameshift_variant | 23 | A1,A22,A24,A5,B109,B131,B138,B33,B34,B59,B66,B70,B73,B83,B90,C24,C33,C45,C7,C77,C9,D2,D7 |
Chr6:13045408 |
CCT |
C |
2bp_deletion | frameshift_variant | 42 | A14,A23,A7,B1,B105,B110,B113,B117,B129,B136,B139,B17,B31,B32,B6,B61,B7,B74,B77,B85,B87,B95,C11,C16,C17,C29,C30,C33,C37,C49,C53,C62,C64,C66,C67,C74,C78,C79,C82,C85,C86,D10 |
Chr6:13045416 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B126,B9,C44 |
Chr6:13045419 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B99,C38 |
Chr6:13045443 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A5,B124,B62,C1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770724.1PF00078
RVT_1 368-508 aa
PF17919
RT_RNaseH_2 532-630 aa
PF17917
RT_RNaseH 560-659 aa
PF13456
RVT_3 695-813 aa
PF17921
Integrase_H2C2 902-951 aa
PF00665
rve 969-1067 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770724.1 |
Pfam | PF00078 |
RVT_1 | Domain | 368 | 508 | 1.2e-24 | 88.0 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057770724.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 532 | 630 | 6.5e-19 | 68.6 | RNase H-like domain found in reverse transcriptase |
XP_057770724.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 560 | 659 | 1.6e-12 | 48.2 | RNase H-like domain found in reverse transcriptase |
XP_057770724.1 |
Pfam | PF13456 |
RVT_3 | Domain | 695 | 813 | 2.3e-11 | 44.4 | Reverse transcriptase-like |
XP_057770724.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 902 | 951 | 3.4e-11 | 43.8 | Integrase zinc binding domain |
XP_057770724.1 |
Pfam | PF00665 |
rve | Domain | 969 | 1067 | 2.3e-17 | 63.8 | Integrase core domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。