当前解析结果
SmilChr06G001270| 统一新 Gene ID | SmilChr06G001270 |
|---|---|
| 名称 | SmilChr06G001270 |
| 描述 | FACT complex subunit SSRP1 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 13278375 - 13284320 / - |
| NCBI Gene ID | LOC130988757 |
|---|---|
| GeneID | 130988757 |
| locus_tag | - |
| NCBI Name | LOC130988757 |
| 原始查询 | SmilChr06G001270 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | FACT complex subunit SSRP1 |
| 产物 | FACT complex subunit SSRP1 |
| Arabidopsis | AT3G28730 (HMG)high mobility group [Source:NCBI gene (formerly Entrezgene);Acc:822505] identity=72; qcov=1; evalue=0; confidence=high |
| Rice | Os01g0184900 (BIP104)- identity=66.9; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0003677 (DNA binding); GO:0005634 (nucleus); GO:0031491 (nucleosome binding); GO:0035101 (FACT complex); GO:0042393 (histone binding) |
| KEGG | - |
| Pfam | PF00505 (HMG_box); PF03531 (SSrecog); PF08512 (Rttp106-like_middle); PF09011 (HMG_box_2); PF17292 (POB3_N); PF21103 (PH1_SSRP1-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988757 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057768690.1 |
| 2 | Chromosome | 染色体 | 1.00000 | XP_057768690.1 |
| 3 | Nucleoplasm | 核质 | 1.00000 | XP_057768690.1 |
| 4 | Chromatin | 染色质 | 0.40000 | XP_057768691.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057768690.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:13278540 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr6:13278566 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A10 |
Chr6:13279441 |
A |
AC |
1bp_insertion | frameshift_variant | 3 | B15,B21,B62 |
Chr6:13279441 |
A |
AC |
1bp_insertion | CDS_variant | 3 | B15,B21,B62 |
Chr6:13279566 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr6:13279595 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr6:13280010 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B14,B77,C73 |
Chr6:13280236 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr6:13280317 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B28,D3 |
Chr6:13280352 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr6:13280359 |
CAG |
C |
2bp_deletion | frameshift_variant | 26 | A16,B100,B113,B132,B139,B15,B49,B55,B59,B62,B64,B72,B73,B81,B83,C1,C14,C36,C38,C49,C52,C54,C59,C67,C79,D9 |
Chr6:13280373 |
AG |
A |
1bp_deletion | frameshift_variant | 8 | B62,B72,B73,B83,C1,C14,C54,C59 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057768690.1PF17292
POB3_N 20-111 aa
PF03531
SSrecog 116-191 aa
PF21103
PH1_SSRP1-like 220-349 aa
PF08512
Rttp106-like_middle 362-452 aa
PF09011
HMG_box_2 566-636 aa
PF00505
HMG_box 569-637 aa
XP_057768691.1PF03531
SSrecog 2-61 aa
PF21103
PH1_SSRP1-like 90-219 aa
PF08512
Rttp106-like_middle 232-322 aa
PF09011
HMG_box_2 436-506 aa
PF00505
HMG_box 439-507 aa
XP_057768692.1PF03531
SSrecog 2-61 aa
PF21103
PH1_SSRP1-like 90-219 aa
PF08512
Rttp106-like_middle 232-322 aa
PF09011
HMG_box_2 436-506 aa
PF00505
HMG_box 439-507 aa
XP_057768694.1PF03531
SSrecog 2-61 aa
PF21103
PH1_SSRP1-like 90-219 aa
PF08512
Rttp106-like_middle 232-322 aa
PF09011
HMG_box_2 436-506 aa
PF00505
HMG_box 439-507 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768690.1 |
Pfam | PF17292 |
POB3_N | Domain | 20 | 111 | 1.3e-25 | 90.4 | POB3-like N-terminal PH domain |
XP_057768690.1 |
Pfam | PF03531 |
SSrecog | Domain | 116 | 191 | 1.3e-25 | 89.8 | Structure-specific recognition protein (SSRP1) |
XP_057768690.1 |
Pfam | PF21103 |
PH1_SSRP1-like | Domain | 220 | 349 | 1e-47 | 162.0 | SSRP1 PH domain |
XP_057768690.1 |
Pfam | PF08512 |
Rttp106-like_middle | Domain | 362 | 452 | 6.2e-23 | 81.7 | Histone chaperone Rttp106-like, middle domain |
XP_057768690.1 |
Pfam | PF09011 |
HMG_box_2 | Domain | 566 | 636 | 4.3e-17 | 63.3 | HMG-box domain |
XP_057768690.1 |
Pfam | PF00505 |
HMG_box | Domain | 569 | 637 | 1.5e-21 | 77.3 | HMG (high mobility group) box |
XP_057768691.1 |
Pfam | PF03531 |
SSrecog | Domain | 2 | 61 | 1.4e-17 | 64.1 | Structure-specific recognition protein (SSRP1) |
XP_057768691.1 |
Pfam | PF21103 |
PH1_SSRP1-like | Domain | 90 | 219 | 6.8e-48 | 162.6 | SSRP1 PH domain |
XP_057768691.1 |
Pfam | PF08512 |
Rttp106-like_middle | Domain | 232 | 322 | 3.3e-22 | 79.4 | Histone chaperone Rttp106-like, middle domain |
XP_057768691.1 |
Pfam | PF09011 |
HMG_box_2 | Domain | 436 | 506 | 2.9e-17 | 63.8 | HMG-box domain |
XP_057768691.1 |
Pfam | PF00505 |
HMG_box | Domain | 439 | 507 | 1e-21 | 77.8 | HMG (high mobility group) box |
XP_057768692.1 |
Pfam | PF03531 |
SSrecog | Domain | 2 | 61 | 1.4e-17 | 64.1 | Structure-specific recognition protein (SSRP1) |
XP_057768692.1 |
Pfam | PF21103 |
PH1_SSRP1-like | Domain | 90 | 219 | 6.8e-48 | 162.6 | SSRP1 PH domain |
XP_057768692.1 |
Pfam | PF08512 |
Rttp106-like_middle | Domain | 232 | 322 | 3.3e-22 | 79.4 | Histone chaperone Rttp106-like, middle domain |
XP_057768692.1 |
Pfam | PF09011 |
HMG_box_2 | Domain | 436 | 506 | 2.9e-17 | 63.8 | HMG-box domain |
XP_057768692.1 |
Pfam | PF00505 |
HMG_box | Domain | 439 | 507 | 1e-21 | 77.8 | HMG (high mobility group) box |
XP_057768694.1 |
Pfam | PF03531 |
SSrecog | Domain | 2 | 61 | 1.4e-17 | 64.1 | Structure-specific recognition protein (SSRP1) |
XP_057768694.1 |
Pfam | PF21103 |
PH1_SSRP1-like | Domain | 90 | 219 | 6.8e-48 | 162.6 | SSRP1 PH domain |
XP_057768694.1 |
Pfam | PF08512 |
Rttp106-like_middle | Domain | 232 | 322 | 3.3e-22 | 79.4 | Histone chaperone Rttp106-like, middle domain |
XP_057768694.1 |
Pfam | PF09011 |
HMG_box_2 | Domain | 436 | 506 | 2.9e-17 | 63.8 | HMG-box domain |
XP_057768694.1 |
Pfam | PF00505 |
HMG_box | Domain | 439 | 507 | 1e-21 | 77.8 | HMG (high mobility group) box |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。