Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001280`

染色体: Chr06 坐标: 13377401-13394111 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001280`
名称	SmilChr06G001280
描述	uncharacterized SmilChr06G001280
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	13377401 - 13394111 / `-`

ID 对照

NCBI Gene ID	`LOC130988750`
GeneID	`130988750`
locus_tag	`-`
NCBI Name	`LOC130988750`
原始查询	`SmilChr06G001280`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829224]; symbol=AT4G30990; hit=AT4G30990; species=arabidopsis; confidence=medium
产物	ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829224]; symbol=AT4G30990; hit=AT4G30990; species=arabidopsis; confidence=medium
Arabidopsis	`AT4G30990` (AT4G30990) ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829224] identity=43; qcov=1.02; evalue=0; confidence=medium
Rice	`Os01g0584800` - identity=62.8; qcov=0.016; evalue=1.1e-11; confidence=weak
GO	GO:0005730 (nucleolus); GO:0030686 (90S preribosome); GO:0032040 (small-subunit processome)
KEGG	-
Pfam	PF07539 (UTP20_N); PF20416 (UTP20); PF23099 (UTP20_C)
InterPro	-
eggNOG	-
NR	GeneID:130988750

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057768678.1`
2	Chromosome	染色体	0.20000	`XP_057768678.1`
3	Nucleolus	核仁	0.20000	`XP_057768678.1`
4	Centromere	着丝粒	0.00000	`XP_057768678.1`
5	Chromatin	染色质	0.00000	`XP_057768678.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:13377756`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr6:13377776`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C32
`Chr6:13377814`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B120,B79,C36,C8,D6
`Chr6:13377818`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr6:13378271`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A9,B120,B46,D1,D3
`Chr6:13378301`	`C`	`CA`	1bp_insertion	frameshift_variant	29	A1,A10,A14,B103,B105,B108,B109,B115,B129,B22,B35,B36,B58,B64,B73,B80,B81,B90,B92,B98,C17,C21,C23,C36,C43,C47,C71,C78,C79
`Chr6:13378302`	`G`	`GT`	1bp_insertion	frameshift_variant	29	A1,A10,A14,B103,B105,B108,B109,B115,B129,B22,B35,B36,B58,B64,B73,B80,B81,B90,B92,B98,C17,C21,C23,C36,C43,C47,C71,C78,C79
`Chr6:13378303`	`G`	`GCA`	2bp_insertion	frameshift_variant	8	B102,B4,B46,B79,C36,D1,D3,D6
`Chr6:13378305`	`GTT`	`G`	2bp_deletion	frameshift_variant	36	A1,A10,A14,B102,B103,B105,B108,B109,B115,B129,B22,B35,B36,B4,B46,B58,B64,B73,B79,B80,B81,B90,B92,B98,C17,C21,C23,C36,C43,C47,C71,C78,C79,D1,D3,D6
`Chr6:13378341`	`G`	`GTT`	2bp_insertion	frameshift_variant	13	A9,B102,B120,B17,B4,B46,B79,B97,C36,C39,C8,D3,D6
`Chr6:13378415`	`C`	`CA`	1bp_insertion	frameshift_variant	14	A9,B102,B120,B17,B4,B46,B79,B97,C36,C39,C8,D1,D3,D6
`Chr6:13378504`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768678.1

2655 aa

1328

2655

UTP20_N

UTP20

UTP20_C

PF07539 UTP20_N 893-1521 aa PF20416 UTP20 1733-1949 aa PF23099 UTP20_C 2555-2649 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768678.1`	Pfam	`PF07539`	UTP20_N	Repeat	893	1521	1e-99	335.3	U3 small nucleolar RNA-associated protein 20, N-terminal
`XP_057768678.1`	Pfam	`PF20416`	UTP20	Repeat	1733	1949	4.1e-60	203.7	U3 small nucleolar RNA-associated protein 20 domain
`XP_057768678.1`	Pfam	`PF23099`	UTP20_C	Repeat	2555	2649	6e-14	52.8	Small subunit processome component 20 homolog, C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057912695.1
CATCACAGCTTCGCCAAGTCGCGCTGTCGTCTAGAGCCACTAAACCCCATCGCGACGCGACGCCGTCCAACGCGCGTACCACTATCGTAGTTGATTTTCTACGCTACAACCACCGATTTTGGTCCTGGCGTCGCCGGAGCTCTCAGTAAGCAGCAATCAAGGCAACCGGTGACCAGCATAAGAATTTCATGGCGGCAGTAAAGTCTTACAATGACTCCACTTGCCTCCGCCGCGGCCGCTTCGTTTTCAAGACGTTTTCA...

CDS

1 records

下载 CDS FASTA

LOC130988750
ATGGCGGCAGTAAAGTCTTACAATGACTCCACTTGCCTCCGCCGCGGCCGCTTCGTTTTCAAGACGTTTTCACATGGAGTTGAGGAAATCAACATAGGTAGAGATGTGTACCGAAGTCTCAACAAAGATAAGAAACGAGAGGACAAACTGAAAGATAAGACCTCAGAAGGCTCGTCCCATTTCCGCGACTGTCTTATAGAATGCAGAGAGCTGAACACTGCCAAAGATTTTATATCATTTTACGAGGAGATTTTTCCTCT...

Protein

1 records

下载 Protein FASTA

XP_057768678.1
MAAVKSYNDSTCLRRGRFVFKTFSHGVEEINIGRDVYRSLNKDKKREDKLKDKTSEGSSHFRDCLIECRELNTAKDFISFYEEIFPLVQTLPLIILQKDLIVSSLLSVLKMEKRLSLEPILRLIPALSEDLLGDFTPFLSRILDSLELLLQSGADKDPEIIKQIFTSWSHVMRNLKKYLTIDHILRITESLRYYPKDCVQELMAESVSYFLRKRKARIQQLKKCILKLMTEVVEEPSEMRKSGVSALLSHAMRSTSSRLH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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