当前解析结果
SmilChr06G001287| 统一新 Gene ID | SmilChr06G001287 |
|---|---|
| 名称 | SmilChr06G001287 |
| 描述 | casein kinase 1-like protein HD16 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 13444844 - 13451529 / + |
| NCBI Gene ID | LOC130988755 |
|---|---|
| GeneID | 130988755 |
| locus_tag | - |
| NCBI Name | LOC130988755 |
| 原始查询 | SmilChr06G001287 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | casein kinase 1-like protein HD16 |
| 产物 | casein kinase 1-like protein HD16 |
| Arabidopsis | AT3G03940 (AT3G03940)Protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:819551] identity=83.71; qcov=1.0; evalue=0.0; confidence=high |
| Rice | Os01g0772600 (CK1_CaseinKinase_1a.3)- identity=76.99; qcov=0.999; evalue=0.0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0006897 (endocytosis); GO:0007165 (signal transduction); GO:0018105 (peptidyl-serine phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF17667 (Pkinase_fungal); PF24289 (DUF7477) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988755 |
| Rank | 定位位置 | 中文 | 五折投票比例 | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057768686.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057768686.1 |
| 3 | Cytoplasm | 细胞质 | 0.80000 | XP_057768686.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:13446457 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr6:13446549 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:13446826 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:13447388 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
Chr6:13448638 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B109 |
Chr6:13448941 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B52,B70,B71,C62 |
Chr6:13449070 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:13450387 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B33,C27 |
Chr6:13450777 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr6:13450907 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C21 |
Chr6:13451096 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A16,B111,B3,B44,C83 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057768686.1PF00069
Pkinase 144-376 aa
PF07714
PK_Tyr_Ser-Thr 145-308 aa
PF17667
Pkinase_fungal 256-354 aa
PF24289
DUF7477 438-704 aa
XP_057768687.1PF00069
Pkinase 144-376 aa
PF07714
PK_Tyr_Ser-Thr 145-308 aa
PF17667
Pkinase_fungal 256-354 aa
PF24289
DUF7477 438-704 aa
XP_057768688.1PF00069
Pkinase 144-376 aa
PF07714
PK_Tyr_Ser-Thr 145-308 aa
PF17667
Pkinase_fungal 256-354 aa
PF24289
DUF7477 438-704 aa
XP_057768689.1PF00069
Pkinase 144-376 aa
PF07714
PK_Tyr_Ser-Thr 145-308 aa
PF17667
Pkinase_fungal 256-354 aa
PF24289
DUF7477 438-704 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768686.1 |
Pfam | PF00069 |
Pkinase | Domain | 144 | 376 | 2.7e-15 | 57.2 | Protein kinase domain |
XP_057768686.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 145 | 308 | 2.6e-05 | 24.4 | Protein tyrosine and serine/threonine kinase |
XP_057768686.1 |
Pfam | PF17667 |
Pkinase_fungal | Domain | 256 | 354 | 4.7e-08 | 32.9 | Fungal protein kinase |
XP_057768686.1 |
Pfam | PF24289 |
DUF7477 | Repeat | 438 | 704 | 4.8e-161 | 534.9 | Domain of unknown function (DUF7477) |
XP_057768687.1 |
Pfam | PF00069 |
Pkinase | Domain | 144 | 376 | 2.7e-15 | 57.2 | Protein kinase domain |
XP_057768687.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 145 | 308 | 2.6e-05 | 24.4 | Protein tyrosine and serine/threonine kinase |
XP_057768687.1 |
Pfam | PF17667 |
Pkinase_fungal | Domain | 256 | 354 | 4.7e-08 | 32.9 | Fungal protein kinase |
XP_057768687.1 |
Pfam | PF24289 |
DUF7477 | Repeat | 438 | 704 | 4.8e-161 | 534.9 | Domain of unknown function (DUF7477) |
XP_057768688.1 |
Pfam | PF00069 |
Pkinase | Domain | 144 | 376 | 2.7e-15 | 57.2 | Protein kinase domain |
XP_057768688.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 145 | 308 | 2.6e-05 | 24.4 | Protein tyrosine and serine/threonine kinase |
XP_057768688.1 |
Pfam | PF17667 |
Pkinase_fungal | Domain | 256 | 354 | 4.7e-08 | 32.9 | Fungal protein kinase |
XP_057768688.1 |
Pfam | PF24289 |
DUF7477 | Repeat | 438 | 704 | 4.8e-161 | 534.9 | Domain of unknown function (DUF7477) |
XP_057768689.1 |
Pfam | PF00069 |
Pkinase | Domain | 144 | 376 | 2.7e-15 | 57.2 | Protein kinase domain |
XP_057768689.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 145 | 308 | 2.6e-05 | 24.4 | Protein tyrosine and serine/threonine kinase |
XP_057768689.1 |
Pfam | PF17667 |
Pkinase_fungal | Domain | 256 | 354 | 4.7e-08 | 32.9 | Fungal protein kinase |
XP_057768689.1 |
Pfam | PF24289 |
DUF7477 | Repeat | 438 | 704 | 4.8e-161 | 534.9 | Domain of unknown function (DUF7477) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。