Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001297`

染色体: Chr06 坐标: 13504616-13521581 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001297`
名称	SmilChr06G001297
描述	rRNA biogenesis protein RRP5
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	13504616 - 13521581 / `-`

ID 对照

NCBI Gene ID	`LOC130988751`
GeneID	`130988751`
locus_tag	`-`
NCBI Name	`LOC130988751`
原始查询	`SmilChr06G001297`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	rRNA biogenesis protein RRP5
产物	rRNA biogenesis protein RRP5
Arabidopsis	`AT3G11964` (AT3G11964) RIBOSOMAL RNA PROCESSING 5 [Source:NCBI gene (formerly Entrezgene);Acc:820370] identity=60; qcov=1; evalue=0; confidence=high
Rice	`Os07g0203300` - identity=55.8; qcov=0.371; evalue=0; confidence=low
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0005730 (nucleolus); GO:0006364 (rRNA processing); GO:0032040 (small-subunit processome)
KEGG	-
Pfam	PF00575 (S1); PF05843 (Suf); PF23231 (HAT_Syf1_CNRKL1_C); PF23233 (HAT_Syf1_CNRKL1_N); PF23459 (S1_RRP5); PF24682 (OB_RRP5); PF24685 (OB_RRP5_4th); PF29086 (OB_PDCD11)
InterPro	-
eggNOG	-
NR	GeneID:130988751

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057768679.1`
2	Nucleolus	核仁	1.00000	`XP_057768679.1`
3	Chromosome	染色体	0.00000	`XP_057768679.1`
4	Centromere	着丝粒	0.00000	`XP_057768679.1`
5	Chromatin	染色质	0.00000	`XP_057768679.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:13505499`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr6:13505681`	`TCA`	`T`	2bp_deletion	frameshift_variant	1	B88
`Chr6:13505681`	`TCA`	`T`	2bp_deletion	CDS_variant	1	B88
`Chr6:13506559`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:13506769`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr6:13507014`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr6:13508012`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:13508115`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B24,C8
`Chr6:13508117`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C47
`Chr6:13508381`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A19,A24,B113,C37,C86
`Chr6:13508421`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr6:13509025`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768679.1

1927 aa

964

1927

OB_RRP5_4th

OB_RRP5

OB_PDCD11

S1_RRP5

HAT_Syf1_CNRKL1_N

HAT_Syf1_CNRKL1_C

Suf

PF24685 OB_RRP5_4th 382-472 aa PF00575 S1 477-515 aa PF00575 S1 607-672 aa PF00575 S1 782-850 aa PF24682 OB_RRP5 973-1060 aa PF29086 OB_PDCD11 1072-1139 aa PF23459 S1_RRP5 1372-1442 aa PF00575 S1 1375-1441 aa PF00575 S1 1463-1535 aa PF23233 HAT_Syf1_CNRKL1_N 1644-1749 aa PF23231 HAT_Syf1_CNRKL1_C 1677-1924 aa PF05843 Suf 1826-1923 aa

XP_057768681.1

1889 aa

944

1889

OB_RRP5_4th

OB_RRP5

OB_PDCD11

S1_RRP5

HAT_Syf1_CNRKL1_N

HAT_Syf1_CNRKL1_C

Suf

PF24685 OB_RRP5_4th 382-472 aa PF00575 S1 477-541 aa PF00575 S1 569-634 aa PF00575 S1 744-812 aa PF24682 OB_RRP5 935-1022 aa PF29086 OB_PDCD11 1034-1101 aa PF23459 S1_RRP5 1334-1404 aa PF00575 S1 1337-1403 aa PF00575 S1 1425-1497 aa PF23233 HAT_Syf1_CNRKL1_N 1606-1711 aa PF23231 HAT_Syf1_CNRKL1_C 1639-1886 aa PF05843 Suf 1788-1885 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768679.1`	Pfam	`PF24685`	OB_RRP5_4th	Domain	382	472	2.4e-55	185.3	RRP5 OB-fold domain
`XP_057768679.1`	Pfam	`PF00575`	S1	Domain	477	515	1.6e-67	224.6	S1 RNA binding domain
`XP_057768679.1`	Pfam	`PF00575`	S1	Domain	607	672	1.6e-67	224.6	S1 RNA binding domain
`XP_057768679.1`	Pfam	`PF00575`	S1	Domain	782	850	1.6e-67	224.6	S1 RNA binding domain
`XP_057768679.1`	Pfam	`PF24682`	OB_RRP5	Domain	973	1060	9e-47	157.5	RRP5 OB-fold domain
`XP_057768679.1`	Pfam	`PF29086`	OB_PDCD11	Domain	1072	1139	1.1e-41	141.8	Protein RRP5 homolog-like, OB domain
`XP_057768679.1`	Pfam	`PF23459`	S1_RRP5	Domain	1372	1442	7.6e-75	248.2	RRP5 S1 domain
`XP_057768679.1`	Pfam	`PF00575`	S1	Domain	1375	1441	1.6e-67	224.6	S1 RNA binding domain
`XP_057768679.1`	Pfam	`PF00575`	S1	Domain	1463	1535	1.6e-67	224.6	S1 RNA binding domain
`XP_057768679.1`	Pfam	`PF23233`	HAT_Syf1_CNRKL1_N	Repeat	1644	1749	2.6e-14	54.1	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
`XP_057768679.1`	Pfam	`PF23231`	HAT_Syf1_CNRKL1_C	Repeat	1677	1924	4.5e-11	42.8	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
`XP_057768679.1`	Pfam	`PF05843`	Suf	Repeat	1826	1923	4.5e-16	59.2	Suppressor of forked protein (Suf)
`XP_057768681.1`	Pfam	`PF24685`	OB_RRP5_4th	Domain	382	472	1.5e-57	192.3	RRP5 OB-fold domain
`XP_057768681.1`	Pfam	`PF00575`	S1	Domain	477	541	8.6e-70	231.8	S1 RNA binding domain
`XP_057768681.1`	Pfam	`PF00575`	S1	Domain	569	634	8.6e-70	231.8	S1 RNA binding domain
`XP_057768681.1`	Pfam	`PF00575`	S1	Domain	744	812	8.6e-70	231.8	S1 RNA binding domain
`XP_057768681.1`	Pfam	`PF24682`	OB_RRP5	Domain	935	1022	8e-47	157.6	RRP5 OB-fold domain
`XP_057768681.1`	Pfam	`PF29086`	OB_PDCD11	Domain	1034	1101	1.4e-41	141.6	Protein RRP5 homolog-like, OB domain
`XP_057768681.1`	Pfam	`PF23459`	S1_RRP5	Domain	1334	1404	1.2e-75	250.7	RRP5 S1 domain
`XP_057768681.1`	Pfam	`PF00575`	S1	Domain	1337	1403	8.6e-70	231.8	S1 RNA binding domain
`XP_057768681.1`	Pfam	`PF00575`	S1	Domain	1425	1497	8.6e-70	231.8	S1 RNA binding domain
`XP_057768681.1`	Pfam	`PF23233`	HAT_Syf1_CNRKL1_N	Repeat	1606	1711	6.3e-15	56.0	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
`XP_057768681.1`	Pfam	`PF23231`	HAT_Syf1_CNRKL1_C	Repeat	1639	1886	4.2e-11	43.0	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
`XP_057768681.1`	Pfam	`PF05843`	Suf	Repeat	1788	1885	3.9e-16	59.4	Suppressor of forked protein (Suf)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057912696.1
AAATTAAATTTAGTGAGTGTGATTAAGGGAAGAAAAAAAAAAAATTATAGAGGTATCATAAAACCCTGCAAAAACCCCCTTCTCCGCCGCTGCTCTCTCTCTCCACCGCTCTTCTCTCCACTCTGAGGGCTGATTTACTTTACAGTGAAGCTGTTTATTGAGAGAGTGTTATTTACCCTCTACTTGGCGGATTGCTGAGGAAATGGCGCCGCCTGCAAAAAAAACCCACTCGGAAAGACCTCGAGGCCGCCCCAACGGCG...

XM_057912698.1
TGATTAAGGGAAGAAAAAAAAAAAATTATAGAGGTATCATAAAACCCTGCAAAAACCCCCTTCTCCGCCGCTGCTCTCTCTCTCCACCGCTCTTCTCTCCACTCTGAGGGCTGATTTACTTTACAGTGAAGCTGTTTATTGAGAGAGTGTTATTTACCCTCTACTTGGCGGATTGCTGAGGAAATGGCGCCGCCTGCAAAAAAAACCCACTCGGAAAGACCTCGAGGCCGCCCCAACGGCGTCGTTCCGTCGTCAAAGTT...

CDS

2 records

下载 CDS FASTA

LOC130988751
ATGGCGCCGCCTGCAAAAAAAACCCACTCGGAAAGACCTCGAGGCCGCCCCAACGGCGTCGTTCCGTCGTCAAAGTTGCCTCTTCAGCTCGAAGACGATGTTCCCGACTTCCCAAGAGGAGGGGGGACTTCGCTGAGTAGGGAAGAGAGAAATGAGGCAAGGGAAGGAGTTGATAAGGACTTTGAGACAGACAATAGAGTCCTAAAGAAAAGGAAGAAGGATAAGAGGGTGCAAAATAAGAATAATTCAACTGAGGATGA...

Protein

2 records

下载 Protein FASTA

XP_057768679.1
MAPPAKKTHSERPRGRPNGVVPSSKLPLQLEDDVPDFPRGGGTSLSREERNEAREGVDKDFETDNRVLKKRKKDKRVQNKNNSTEDDLGLLFGDGITGKLPRFANKITLKNVSSGMKLWGVIAEVNEKDIVVSLPGGLRGLIRACDAFDPIPSDEVKGDADNSFLSRIYQKGQLVSCVVLQVDDDRKELAKRKIWLSLRLSVLHKSLTLDSIQEGMVLSAYVKSIEDHGFMLHFGLPSFAGFMPKQNQSEGRNLNVGIGQ...

XP_057768681.1
MAPPAKKTHSERPRGRPNGVVPSSKLPLQLEDDVPDFPRGGGTSLSREERNEAREGVDKDFETDNRVLKKRKKDKRVQNKNNSTEDDLGLLFGDGITGKLPRFANKITLKNVSSGMKLWGVIAEVNEKDIVVSLPGGLRGLIRACDAFDPIPSDEVKGDADNSFLSRIYQKGQLVSCVVLQVDDDRKELAKRKIWLSLRLSVLHKSLTLDSIQEGMVLSAYVKSIEDHGFMLHFGLPSFAGFMPKQNQSEGRNLNVGIGQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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