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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G001299

染色体: Chr06 坐标: 13532527-13534790 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G001299
名称SmilChr06G001299
描述pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向13532527 - 13534790 / -

ID 对照

NCBI Gene IDLOC130988761
GeneID130988761
locus_tag-
NCBI NameLOC130988761
原始查询SmilChr06G001299

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like
产物pentatricopeptide repeat-containing protein At1g12300%2C mitochondrial-like
ArabidopsisAT1G12300 (AT1G12300)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837784]
identity=37.2; qcov=0.982; evalue=7.39e-131; confidence=medium
RiceOs10g0497300 (PPR794)
-
identity=30.6; qcov=0.929; evalue=1.64e-86; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130988761

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057768701.1
2 Chloroplast 叶绿体 0.20000 XP_057768701.1
3 Nucleus 细胞核 0.00000 XP_057768701.1
4 Chromosome 染色体 0.00000 XP_057768701.1
5 Centromere 着丝粒 0.00000 XP_057768701.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:13532933 C T EMS_canonical_SNV CDS_variant 1 C22
Chr6:13532962 A AT 1bp_insertion frameshift_variant 79 A13,A15,A16,A21,A25,A5,A9,B103,B105,B106,B110,B117,B121,B124,B130,B134,B136,B137,B138,B139,B14,B17,B19,B23,B28,B32,B41,B42,B43,B44,B47,B49,B5,B50,B53,B56,B57,B60,B62,B64,B68,B75,B84,B86,B88,B9,B93,B96,B99,C12,C13,C26,C27,C29,C30,C31,C32,C36,C38,C4,C43,C45,C48,C53,C56,C59,C6,C60,C64,C65,C66,C68,C70,C75,C80,D1,D10,D5,D6
Chr6:13532978 C T EMS_canonical_SNV CDS_variant 1 B107
Chr6:13533001 G A EMS_canonical_SNV CDS_variant 1 B107
Chr6:13533075 C T EMS_canonical_SNV CDS_variant 1 B26
Chr6:13533108 G A EMS_canonical_SNV CDS_variant 2 B40,B58
Chr6:13533218 C T EMS_canonical_SNV CDS_variant 3 B53,C13,D7
Chr6:13533233 C CTG 2bp_insertion frameshift_variant 4 A18,B129,C42,C47
Chr6:13533233 C CTG 2bp_insertion CDS_variant 4 A18,B129,C42,C47
Chr6:13533235 C T EMS_canonical_SNV CDS_variant 4 B25,C42,C49,C9
Chr6:13533270 C T EMS_canonical_SNV CDS_variant 1 B1
Chr6:13533294 C T EMS_canonical_SNV CDS_variant 2 A14,C72

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768701.1
602 aa
N
1
301
602
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_long
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
TPR_24
PPR_2
PPR
PPR_2
PPR
C
PF13041 PPR_2 75-123 aa PF01535 PPR 79-108 aa PF13812 PPR_3 99-155 aa PF12854 PPR_1 142-172 aa PF13041 PPR_2 145-195 aa PF01535 PPR 149-178 aa PF01535 PPR 188-212 aa PF23276 TPR_24 203-307 aa PF13812 PPR_3 205-261 aa PF12854 PPR_1 214-244 aa PF13041 PPR_2 216-265 aa PF01535 PPR 220-249 aa PF12854 PPR_1 247-280 aa PF13041 PPR_2 251-300 aa PF01535 PPR 254-284 aa PF13812 PPR_3 275-331 aa PF17177 PPR_long 276-375 aa PF12854 PPR_1 283-315 aa PF13041 PPR_2 287-334 aa PF01535 PPR 289-319 aa PF23276 TPR_24 307-418 aa PF13812 PPR_3 310-368 aa PF12854 PPR_1 317-348 aa PF13041 PPR_2 321-361 aa PF01535 PPR 324-354 aa PF12854 PPR_1 352-377 aa PF13041 PPR_2 356-403 aa PF01535 PPR 359-388 aa PF13812 PPR_3 384-436 aa PF12854 PPR_1 387-420 aa PF13041 PPR_2 392-440 aa PF01535 PPR 395-423 aa PF13812 PPR_3 414-451 aa PF12854 PPR_1 424-452 aa PF13041 PPR_2 426-475 aa PF01535 PPR 429-459 aa PF13812 PPR_3 451-508 aa PF12854 PPR_1 457-488 aa PF13041 PPR_2 462-496 aa PF01535 PPR 464-494 aa PF23276 TPR_24 469-578 aa PF13041 PPR_2 498-540 aa PF01535 PPR 500-528 aa PF13041 PPR_2 533-577 aa PF01535 PPR 535-565 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057768701.1 Pfam PF13041 PPR_2 Repeat 75 123 8.1e-150 487.6 PPR repeat family
XP_057768701.1 Pfam PF01535 PPR Repeat 79 108 1.5e-90 292.0 PPR repeat
XP_057768701.1 Pfam PF13812 PPR_3 Repeat 99 155 7.5e-61 202.8 Pentatricopeptide repeat domain
XP_057768701.1 Pfam PF12854 PPR_1 Repeat 142 172 4.3e-116 379.0 PPR repeat
XP_057768701.1 Pfam PF13041 PPR_2 Repeat 145 195 8.1e-150 487.6 PPR repeat family
XP_057768701.1 Pfam PF01535 PPR Repeat 149 178 1.5e-90 292.0 PPR repeat
XP_057768701.1 Pfam PF01535 PPR Repeat 188 212 1.5e-90 292.0 PPR repeat
XP_057768701.1 Pfam PF23276 TPR_24 Repeat 203 307 3.9e-31 108.4 Pentatricopeptide repeat-containing protein
XP_057768701.1 Pfam PF13812 PPR_3 Repeat 205 261 7.5e-61 202.8 Pentatricopeptide repeat domain
XP_057768701.1 Pfam PF12854 PPR_1 Repeat 214 244 4.3e-116 379.0 PPR repeat
XP_057768701.1 Pfam PF13041 PPR_2 Repeat 216 265 8.1e-150 487.6 PPR repeat family
XP_057768701.1 Pfam PF01535 PPR Repeat 220 249 1.5e-90 292.0 PPR repeat
XP_057768701.1 Pfam PF12854 PPR_1 Repeat 247 280 4.3e-116 379.0 PPR repeat
XP_057768701.1 Pfam PF13041 PPR_2 Repeat 251 300 8.1e-150 487.6 PPR repeat family
XP_057768701.1 Pfam PF01535 PPR Repeat 254 284 1.5e-90 292.0 PPR repeat
XP_057768701.1 Pfam PF13812 PPR_3 Repeat 275 331 7.5e-61 202.8 Pentatricopeptide repeat domain
XP_057768701.1 Pfam PF17177 PPR_long Repeat 276 375 4.7e-26 92.2 Pentacotripeptide-repeat region of PRORP
XP_057768701.1 Pfam PF12854 PPR_1 Repeat 283 315 4.3e-116 379.0 PPR repeat
XP_057768701.1 Pfam PF13041 PPR_2 Repeat 287 334 8.1e-150 487.6 PPR repeat family
XP_057768701.1 Pfam PF01535 PPR Repeat 289 319 1.5e-90 292.0 PPR repeat
XP_057768701.1 Pfam PF23276 TPR_24 Repeat 307 418 3.9e-31 108.4 Pentatricopeptide repeat-containing protein
XP_057768701.1 Pfam PF13812 PPR_3 Repeat 310 368 7.5e-61 202.8 Pentatricopeptide repeat domain
XP_057768701.1 Pfam PF12854 PPR_1 Repeat 317 348 4.3e-116 379.0 PPR repeat
XP_057768701.1 Pfam PF13041 PPR_2 Repeat 321 361 8.1e-150 487.6 PPR repeat family
XP_057768701.1 Pfam PF01535 PPR Repeat 324 354 1.5e-90 292.0 PPR repeat
XP_057768701.1 Pfam PF12854 PPR_1 Repeat 352 377 4.3e-116 379.0 PPR repeat
XP_057768701.1 Pfam PF13041 PPR_2 Repeat 356 403 8.1e-150 487.6 PPR repeat family
XP_057768701.1 Pfam PF01535 PPR Repeat 359 388 1.5e-90 292.0 PPR repeat
XP_057768701.1 Pfam PF13812 PPR_3 Repeat 384 436 7.5e-61 202.8 Pentatricopeptide repeat domain
XP_057768701.1 Pfam PF12854 PPR_1 Repeat 387 420 4.3e-116 379.0 PPR repeat
XP_057768701.1 Pfam PF13041 PPR_2 Repeat 392 440 8.1e-150 487.6 PPR repeat family
XP_057768701.1 Pfam PF01535 PPR Repeat 395 423 1.5e-90 292.0 PPR repeat
XP_057768701.1 Pfam PF13812 PPR_3 Repeat 414 451 7.5e-61 202.8 Pentatricopeptide repeat domain
XP_057768701.1 Pfam PF12854 PPR_1 Repeat 424 452 4.3e-116 379.0 PPR repeat
XP_057768701.1 Pfam PF13041 PPR_2 Repeat 426 475 8.1e-150 487.6 PPR repeat family
XP_057768701.1 Pfam PF01535 PPR Repeat 429 459 1.5e-90 292.0 PPR repeat
XP_057768701.1 Pfam PF13812 PPR_3 Repeat 451 508 7.5e-61 202.8 Pentatricopeptide repeat domain
XP_057768701.1 Pfam PF12854 PPR_1 Repeat 457 488 4.3e-116 379.0 PPR repeat
XP_057768701.1 Pfam PF13041 PPR_2 Repeat 462 496 8.1e-150 487.6 PPR repeat family
XP_057768701.1 Pfam PF01535 PPR Repeat 464 494 1.5e-90 292.0 PPR repeat
XP_057768701.1 Pfam PF23276 TPR_24 Repeat 469 578 3.9e-31 108.4 Pentatricopeptide repeat-containing protein
XP_057768701.1 Pfam PF13041 PPR_2 Repeat 498 540 8.1e-150 487.6 PPR repeat family
XP_057768701.1 Pfam PF01535 PPR Repeat 500 528 1.5e-90 292.0 PPR repeat
XP_057768701.1 Pfam PF13041 PPR_2 Repeat 533 577 8.1e-150 487.6 PPR repeat family
XP_057768701.1 Pfam PF01535 PPR Repeat 535 565 1.5e-90 292.0 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057912718.1
GCCCAAAATTCAGAGAAAACAAGTCGCCTTCACCAAAATCTGAGCCGAGAGAACTCGTCCTTTTAAAAAAGTCGCCTTCACCAAAATTGCAAACTCCATCCGTTGCAATTTCATCCCTTTTTTCACAACTCCTAACCAAAAGAGAAAAAGATCCAAACTCACCGATTAATGATGACGACCAGAAGGGCAGCTGTTTCTGCAATCGATCTCATTCATGGAAGAGGATTTCTCAATCGATGGTCGCATAAATCGGGTATTCT...

CDS

1 records

下载 CDS FASTA
LOC130988761
ATGATGACGACCAGAAGGGCAGCTGTTTCTGCAATCGATCTCATTCATGGAAGAGGATTTCTCAATCGATGGTCGCATAAATCGGGTATTCTCTCTCCTCCATTCTCTCTCTTCTCTTCCAAGGCTTTTCAACCAAAGCAGCCCAGAATCGATTTCAGTTGTGTTAAAGAATTAAATGATGCTATTGGATTGTTTCAAAAAATGAAGATTATGCAGCCGGAGCCTTCTGTTCTCGTGTATAATAAACTTATGAGTGTTAG...

Protein

1 records

下载 Protein FASTA
XP_057768701.1
MMTTRRAAVSAIDLIHGRGFLNRWSHKSGILSPPFSLFSSKAFQPKQPRIDFSCVKELNDAIGLFQKMKIMQPEPSVLVYNKLMSVSVKIEQYSFALYVFDEMLRMGVPVNAYTMNIGVNCCCLLKDIKSGFAIMGLFFKSGCEPDVTTFNTLIKGLFLDHKVAEAGKLFNKILRFGICEPDDVMILAMVDGLCKSGNVLPARDLVRRLERSRLRPDVKTYNALLDGLRKSGMVDDAFQLLSTMIEKGISPDVVTYNMMI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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