当前解析结果
SmilChr06G001317| 统一新 Gene ID | SmilChr06G001317 |
|---|---|
| 名称 | SmilChr06G001317 |
| 描述 | zinc finger protein 8-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 13688152 - 13689550 / + |
| NCBI Gene ID | LOC130988799 |
|---|---|
| GeneID | 130988799 |
| locus_tag | - |
| NCBI Name | LOC130988799 |
| 原始查询 | SmilChr06G001317 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc finger protein 8-like |
| 产物 | zinc finger protein 8-like |
| Arabidopsis | AT2G41940 (ZFP8)zinc finger protein 8 [Source:NCBI gene (formerly Entrezgene);Acc:818794] identity=37.5; qcov=1.17; evalue=4.53e-36; confidence=medium |
| Rice | Os02g0775600- identity=50; qcov=0.615; evalue=1.38e-32; confidence=medium |
| GO | GO:0003700 (DNA-binding transcription factor activity); GO:0009739 (response to gibberellin); GO:0010026 (trichome differentiation); GO:0010090 (trichome morphogenesis) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988799 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057768744.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057768744.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057768744.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057768744.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057768744.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:13688752 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr6:13688781 |
GGT |
G |
2bp_deletion | frameshift_variant | 27 | A18,A2,A7,B1,B108,B110,B12,B135,B27,B38,B39,B40,B51,B55,B66,B76,B84,C1,C18,C2,C21,C37,C50,C52,C53,C55,C8 |
Chr6:13688785 |
CA |
C |
1bp_deletion | frameshift_variant | 27 | A18,A2,A7,B1,B108,B110,B12,B135,B27,B38,B39,B40,B51,B55,B66,B76,B84,C1,C18,C2,C21,C37,C50,C52,C53,C55,C8 |
Chr6:13688802 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr6:13688861 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B14,B53,B64,C6 |
Chr6:13688898 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B46,B52 |
Chr6:13688957 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B34,B59,B7,D2 |
Chr6:13688961 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr6:13688963 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr6:13689207 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A3,B45,B89,C10,C72 |
Chr6:13689209 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A16,B111,B3,C83 |
Chr6:13689278 |
TGA |
T |
2bp_deletion | frameshift_variant | 1 | C83 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。