Red Sage Omics Salvia miltiorrhiza reference portal
Home Gene Search ID Map Annotation Domains Pfam Tools PPI Subcellular Expression Co-expression Homology GO/KEGG TFBS TF Targets EMS Variants JBrowse BLAST Download About Help
Data
ID Map Annotation Functional Search Specialized Metabolism Literature Evidence Domains Pfam Homology
Tools
Genome Tools Primer Design HR Primer Design Translate BLAST PPI Subcellular Co-expression GO/KEGG Functional Search
Regulation
TFBS TF Targets EMS Variants
Help
About Help Resources and Release
中文 EN

Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.
Examples

Resolved gene

SmilChr06G001350

Chromosome: Chr06 Coordinates: 14043187-14043309 Strand: + Biotype: snoRNA

Basic Information

Standard Gene IDSmilChr06G001350
NameSmilChr06G001350
Descriptionsmall nucleolar RNA SNORD14
Chromosome / SeqIDChr06 / NC_080392.1
Coordinates and Strand14043187 - 14043309 / +

ID Mapping

NCBI Gene IDLOC130991123
GeneID130991123
locus_tag-
NCBI NameLOC130991123
Original querySmilChr06G001350

Open ID mapping

Functional Annotation

SourceGFF basic annotation
Descriptionsmall nucleolar RNA SNORD14
Productsmall nucleolar RNA SNORD14
Arabidopsis-
-
Rice-
-
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130991123

Open annotation module

Subcellular Localization Top 5

Subcellular localization is still building, or no prediction is available for this gene yet.

Open subcellular search

EMS Mutant Variants

No curated EMS CDS / LoF variants are available for this gene yet, or the EMS database is still building.

Open EMS variants

Predicted Protein Domains

This gene has no available Pfam domain hit in the current release.

Open domain search

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA
XR_009091086.1
TGTCTGTGATGACAAATTCTAAGGCTGTTTCTCAAAACATTCGCAGTGGCCGCCTAAGAGCTTTCGCCTTCGCCAGGCTTGAGAGCTTCTGCTGCTTTTATCCTTCCTTGGATGTCTGAGACA

CDS

0 records

CDS or protein sequence does not apply to this noncoding RNA.

Protein

0 records

CDS or protein sequence does not apply to this noncoding RNA.

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

Download upstream Download downstream Download upstream + gene + downstream

JBrowse

Open genome browser