Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G001357

染色体: Chr06 坐标: 14137434-14139355 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G001357
名称SmilChr06G001357
描述uncharacterized SmilChr06G001357
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向14137434 - 14139355 / +

ID 对照

NCBI Gene IDLOC130988849
GeneID130988849
locus_tag-
NCBI NameLOC130988849
原始查询SmilChr06G001357

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832083]; symbol=AT5G19630; hit=AT5G19630; species=arabidopsis; confidence=high
产物alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832083]; symbol=AT5G19630; hit=AT5G19630; species=arabidopsis; confidence=high
ArabidopsisAT5G19630 (AT5G19630)
alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832083]
identity=65.6; qcov=0.978; evalue=1.17e-105; confidence=high
RiceOs02g0717100
-
identity=65.8; qcov=0.982; evalue=1.76e-101; confidence=high
GO-
KEGG-
PfamPF02129 (Peptidase_S15); PF20408 (Abhydrolase_11)
InterPro-
eggNOG-
NRGeneID:130988849

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 0.80000 XP_057768783.1
2 Lipid droplet 脂滴 0.40000 XP_057768783.1
3 Cytoplasm 细胞质 0.20000 XP_057768783.1
4 Mitochondrion 线粒体 0.20000 XP_057768783.1
5 Nucleus 细胞核 0.00000 XP_057768783.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:14137671 G A EMS_canonical_SNV CDS_variant 2 A23,B122
Chr6:14137686 G A EMS_canonical_SNV CDS_variant 5 A21,B117,B68,C4,C48
Chr6:14137698 G A EMS_canonical_SNV CDS_variant 1 C82
Chr6:14137701 G A EMS_canonical_SNV CDS_variant 1 C80
Chr6:14137761 G A EMS_canonical_SNV CDS_variant 1 C80
Chr6:14137797 C T EMS_canonical_SNV CDS_variant 1 C80
Chr6:14137809 C T EMS_canonical_SNV stop_gained 25 A21,A7,A8,B10,B106,B107,B117,B16,B18,B2,B60,B68,C11,C19,C4,C42,C46,C48,C50,C65,C69,C80,C82,C87,D5
Chr6:14137835 C T EMS_canonical_SNV CDS_variant 2 A2,B112
Chr6:14137883 C T EMS_canonical_SNV CDS_variant 1 A20
Chr6:14137905 G A EMS_canonical_SNV CDS_variant 1 A8
Chr6:14137949 C T EMS_canonical_SNV CDS_variant 1 A8
Chr6:14137980 C T EMS_canonical_SNV CDS_variant 4 A8,C69,C87,D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057768783.1
226 aa
N
1
113
226
Peptidase_S15
Abhydrolase_11
C
PF02129 Peptidase_S15 43-119 aa PF20408 Abhydrolase_11 53-201 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057768783.1 Pfam PF02129 Peptidase_S15 Domain 43 119 9.5e-06 26.2 X-Pro dipeptidyl-peptidase (S15 family)
XP_057768783.1 Pfam PF20408 Abhydrolase_11 Domain 53 201 1.1e-08 35.8 Alpha/beta hydrolase domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057912800.1
GACTAATATTACCTACATATTTCTTCCTCAAGAAGTTGAATAATTTGAGTGAAAATAATAAAACAATTCCCAACTACCTCCATCTTCAACAATCAAAGCTTCACTTTCTCCTTGATCTCAAAAAAGAAAAAGAGAAAAAGCTTCACTTTCTCTCTCCCTCTCTCTCTCATACACACATACACTCTCACTCATAATTTCAACTAATCAACTGAGCAAACAAGAAAGATGAGCAGCAGAGAAAGTCGCACAATCGAGTCAGC...

CDS

1 records

下载 CDS FASTA
LOC130988849
ATGAGCAGCAGAGAAAGTCGCACAATCGAGTCAGCCGGCGGCGTGAGCCTAGATGCCCGCGTCTACCCGGCGGCGGATTCGGATTCGGAGCATCGAAACGACGGATTGGTTGCGGTTTTGGTGCACCCCTACTCGGTGCTGGGCGGATTCCAGGGGCTGATGAAGGGCATGGCCGCCGGGCTAGCCAATAGGGGCGTCACAGCTGTCACCTTCAACATGCGCGGCGTCGGCAACTCCACCGGCCGCGCCTCCCTCACGGG...

Protein

1 records

下载 Protein FASTA
XP_057768783.1
MSSRESRTIESAGGVSLDARVYPAADSDSEHRNDGLVAVLVHPYSVLGGFQGLMKGMAAGLANRGVTAVTFNMRGVGNSTGRASLTGFAEVDDVVSVCQWASHNLSARRILLVGSSAGAPIAGSAVDKVEEVIGYVSLGYPFGWTASILFGRHHKAILQSPKPKLFVMGTKDGFTSVKQLENKLKNAAGSNQTHLIEGVSHFQMEGPAYDEQMVNLILQFISSLPE

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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