当前解析结果
SmilChr06G001357| 统一新 Gene ID | SmilChr06G001357 |
|---|---|
| 名称 | SmilChr06G001357 |
| 描述 | uncharacterized SmilChr06G001357 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 14137434 - 14139355 / + |
| NCBI Gene ID | LOC130988849 |
|---|---|
| GeneID | 130988849 |
| locus_tag | - |
| NCBI Name | LOC130988849 |
| 原始查询 | SmilChr06G001357 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832083]; symbol=AT5G19630; hit=AT5G19630; species=arabidopsis; confidence=high |
| 产物 | alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832083]; symbol=AT5G19630; hit=AT5G19630; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G19630 (AT5G19630)alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832083] identity=65.6; qcov=0.978; evalue=1.17e-105; confidence=high |
| Rice | Os02g0717100- identity=65.8; qcov=0.982; evalue=1.76e-101; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF02129 (Peptidase_S15); PF20408 (Abhydrolase_11) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988849 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057768783.1 |
| 2 | Lipid droplet | 脂滴 | 0.40000 | XP_057768783.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057768783.1 |
| 4 | Mitochondrion | 线粒体 | 0.20000 | XP_057768783.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057768783.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:14137671 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A23,B122 |
Chr6:14137686 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A21,B117,B68,C4,C48 |
Chr6:14137698 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr6:14137701 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C80 |
Chr6:14137761 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C80 |
Chr6:14137797 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C80 |
Chr6:14137809 |
C |
T |
EMS_canonical_SNV | stop_gained | 25 | A21,A7,A8,B10,B106,B107,B117,B16,B18,B2,B60,B68,C11,C19,C4,C42,C46,C48,C50,C65,C69,C80,C82,C87,D5 |
Chr6:14137835 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A2,B112 |
Chr6:14137883 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A20 |
Chr6:14137905 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A8 |
Chr6:14137949 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A8 |
Chr6:14137980 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A8,C69,C87,D5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057768783.1PF02129
Peptidase_S15 43-119 aa
PF20408
Abhydrolase_11 53-201 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768783.1 |
Pfam | PF02129 |
Peptidase_S15 | Domain | 43 | 119 | 9.5e-06 | 26.2 | X-Pro dipeptidyl-peptidase (S15 family) |
XP_057768783.1 |
Pfam | PF20408 |
Abhydrolase_11 | Domain | 53 | 201 | 1.1e-08 | 35.8 | Alpha/beta hydrolase domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。