Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G001371

染色体: Chr06 坐标: 14375962-14378093 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G001371
名称SmilChr06G001371
描述protein POLYCHOME-like
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向14375962 - 14378093 / -

ID 对照

NCBI Gene IDLOC130988866
GeneID130988866
locus_tag-
NCBI NameLOC130988866
原始查询SmilChr06G001371

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述protein POLYCHOME-like
产物protein POLYCHOME-like
ArabidopsisAT2G42260 (UVI4)
uv-b-insensitive 4 [Source:NCBI gene (formerly Entrezgene);Acc:818827]
identity=42; qcov=1.04; evalue=5.62e-46; confidence=medium
RiceOs04g0472700
-
identity=31.8; qcov=0.697; evalue=2.67e-12; confidence=low
GOGO:0005634 (nucleus); GO:0051783 (regulation of nuclear division); GO:1904667 (negative regulation of ubiquitin protein ligase activity)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130988866

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057768815.1
2 Chromosome 染色体 0.60000 XP_057768815.1
3 Nucleoplasm 核质 0.40000 XP_057768815.1
4 Nuclear body 核内小体 0.20000 XP_057768815.1
5 Centromere 着丝粒 0.00000 XP_057768815.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:14376333 TG T 1bp_deletion frameshift_variant 1 B44
Chr6:14376333 TG T 1bp_deletion CDS_variant 1 B44
Chr6:14376337 CGG C 2bp_deletion frameshift_variant 1 B44
Chr6:14376337 CGG C 2bp_deletion CDS_variant 1 B44
Chr6:14376546 C T EMS_canonical_SNV CDS_variant 4 B111,B135,B70,C71
Chr6:14377144 G A EMS_canonical_SNV CDS_variant 5 A16,B3,B70,B71,C62

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057912832.1
CTTTCCATTTTTGCTGAATTTCAAATTTCACTTCATTTTCGCCAGAGTTTTTCAGTTCCATTTCTGCTCAATTTCATTGTATAAATTGCCGCCCACTTCCATTTCCGAAACTCGCCATTTCACCTTCCTTCTCGGCAACTCCTTCTTCATCTGAACCCCTAGATTCACAAATACTCACACTAAAAAGGGGGGAAAACTTGTCCGTTGATTCTGCTTATTACTCGTCTGAAATTTCCTTGCTTTCACCAAACGAAGTAATC...
XM_057912833.1
CTTTCCATTTTTGCTGAATTTCAAATTTCACTTCATTTTCGCCAGAGTTTTTCAGTTCCATTTCTGCTCAATTTCATTGTATAAATTGCCGCCCACTTCCATTTCCGAAACTCGCCATTTCACCTTCCTTCTCGGCAACTCCTTCTTCATCTGAACCCCTAGATTCACAAATACTCACACTAAAAAGGGGGGAAAACTTGTCCGTTGATTCTGCTTATTACTCGTCTGAAATTTCCTTGCTTTCACCAAACGAAGTAATC...

CDS

2 records

下载 CDS FASTA
LOC130988866
ATGCCTGAATCGAGAGATCGGCTGTCGAGGCAAGACAGCATCATAGCATCTTACAGCCGAAGGCGAGTTTCAAGAGCTGGTGATTGGAATAATGGAAGGGGAAATCCGATAGCTTTTGTTCTTGAAGATGATAATGAAGAAGGGCAGAATGCAGGAACACCATTCCGGTGGAGAGATACCACGATGGCCGGGAATCCCGGATCAGCTGGAGTAGCTGCTGGAGGTGCTTTTGGGACCCCAAGAATTAGGCCTCGAAACTT...
LOC130988866
ATGCCTGAATCGAGAGATCGGCTGTCGAGGCAAGACAGCATCATAGCATCTTACAGCCGAAGGCGAGTTTCAAGAGCTGGTGATTGGAATAATGGAAGGGGAAATCCGATAGCTTTTGTTCTTGAAGATGATAATGAAGAAGGGCAGAATGCAGGAACACCATTCCGGTGGAGAGATACCACGATGGCCGGGAATCCCGGATCAGCTGGAGTAGCTGCTGGAGGTGCTTTTGGGACCCCAAGAATTAGGCCTCGAAACTT...

Protein

2 records

下载 Protein FASTA
XP_057768815.1
MPESRDRLSRQDSIIASYSRRRVSRAGDWNNGRGNPIAFVLEDDNEEGQNAGTPFRWRDTTMAGNPGSAGVAAGGAFGTPRIRPRNLSPVVGSGRSRGGAFGTPRIRRIARLAGSENLSPVVGSGRGGGGALPAWYPRRPLNDITAVVRAIERRRERGGDGEGLQTIQDRTSNDQASTPRAHLEHNKAMISPLLAFSNRCFPPSIGKVPKILLDITHHKGGATCFTPQKTLLNSIDAVEKVVMEELRKMKRTPSAKKAER...
XP_057768816.1
MPESRDRLSRQDSIIASYSRRRVSRAGDWNNGRGNPIAFVLEDDNEEGQNAGTPFRWRDTTMAGNPGSAGVAAGGAFGTPRIRPRNLSPVVGSGRSRGGAFGTPRIRRIARLAGSENLSPVVGSGRGGGGALPAWYPRRPLNDITAVVRAIERRRERGGDGEGLQTIQDRTSNDQASTPRAHLEHNKAMISPLLAFSNRCFPPSIGKVPKILLDITHHKGGATCFTPQKTLLNSIDAVEKVVMEELRKMKRTPSAKKAER...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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