当前解析结果
SmilChr06G001379| 统一新 Gene ID | SmilChr06G001379 |
|---|---|
| 名称 | SmilChr06G001379 |
| 描述 | secreted RxLR effector protein 161-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 14453131 - 14453901 / + |
| NCBI Gene ID | LOC130990536 |
|---|---|
| GeneID | 130990536 |
| locus_tag | - |
| NCBI Name | LOC130990536 |
| 原始查询 | SmilChr06G001379 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | secreted RxLR effector protein 161-like |
| 产物 | secreted RxLR effector protein 161-like |
| Arabidopsis | AT4G23160 (CRK8)cysteine-rich RECEPTOR-like kinase [Source:NCBI gene (formerly Entrezgene);Acc:828415] identity=48.1; qcov=0.805; evalue=7.19e-63; confidence=high |
| Rice | Os10g0432200- identity=45.9; qcov=0.953; evalue=2.9e-72; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990536 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057770746.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057770746.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057770746.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057770746.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057770746.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:14453132 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B140 |
Chr6:14453132 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B140 |
Chr6:14453135 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A22,C59,D5 |
Chr6:14453156 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A20,B106,C16 |
Chr6:14453171 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B24,C13,C60,D7 |
Chr6:14453172 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr6:14453173 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B55,B65,C17,C35,C69 |
Chr6:14453175 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr6:14453212 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B92 |
Chr6:14453224 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A3,B107,C47 |
Chr6:14453235 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | C11,C23,C60,C67,C69 |
Chr6:14453237 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B133,B55,C11,C17,C35 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。