Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及有 accession 序列支持的文献基因名查询；未闭环名称仅提供候选导航。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001380`

染色体: Chr06 坐标: 14454599-14459234 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001380`
名称	SmilChr06G001380
描述	OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 4-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	14454599 - 14459234 / `-`

ID 对照

NCBI Gene ID	`LOC130988871`
GeneID	`130988871`
locus_tag	`-`
NCBI Name	`LOC130988871`
原始查询	`SmilChr06G001380`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 4-like
产物	OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 4-like
Arabidopsis	`AT3G57810` (AT3G57810) Cysteine proteinases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824950] identity=47.26; qcov=0.997; evalue=1.22e-93; confidence=high
Rice	`Os09g0487700` - identity=67.54; qcov=0.586; evalue=4.72e-90; confidence=medium
GO	GO:0004843 (cysteine-type deubiquitinase activity); GO:0005634 (nucleus); GO:0005829 (cytosol); GO:0016579 (protein deubiquitination); GO:0030433 (GO:0030433); GO:0030968 (endoplasmic reticulum unfolded protein response)
KEGG	-
Pfam	PF02338 (OTU)
InterPro	-
eggNOG	-
NR	GeneID:130988871

打开注释模块

非零投票定位候选（最多五项）

Rank	定位位置	中文	五折投票比例	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057768819.1`
2	Chloroplast stroma	叶绿体基质	0.80000	`XP_057768821.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:14455908`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A23,C84
`Chr6:14456110`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr6:14456112`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C17
`Chr6:14456666`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C77,D4
`Chr6:14456769`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr6:14456782`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B47
`Chr6:14456828`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr6:14457248`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B4,C42
`Chr6:14457260`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A4
`Chr6:14457261`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr6:14457290`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr6:14457310`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B83,C63

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768819.1

375 aa

188

375

OTU

PF02338 OTU 234-360 aa

XP_057768821.1

319 aa

160

319

OTU

PF02338 OTU 178-304 aa

XP_057768822.1

319 aa

160

319

OTU

PF02338 OTU 178-304 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768819.1`	Pfam	`PF02338`	OTU	Domain	234	360	1.9e-29	103.5	OTU-like cysteine protease
`XP_057768821.1`	Pfam	`PF02338`	OTU	Domain	178	304	1.3e-29	104.0	OTU-like cysteine protease
`XP_057768822.1`	Pfam	`PF02338`	OTU	Domain	178	304	1.3e-29	104.0	OTU-like cysteine protease

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XR_009090224.1
TATTTTATTCTTTACTTTTATTCTGTAGTTGCTTCATTTACCTATTGCTTTCAGTTGAATTTAATTCTGCTTTCCTGCTCGATATTGATGTCTTTTATTCGTATTTCAGCTTATTTTATTATTGATTTCTGTTAAACTTGCAAAATTTATAATTTTCCAATTCAAGTAGGTAATTCTATGTAATTCAATTTATTTTTAATACATGCGTTGCATGTTTAATTTGATCAATGCTTTTGGGTTTTGGCTCCTGGAAATTATTT...

XM_057912838.1
ATGCCTTTTTTGGGCCGCGAGATCGACCTGCCCAAATAGGCAACGACGTCGTTATGGAGCTTTGAAGCTTCATCTAGACAGTAGACTGTAGGCTTCAGAGAGGTTTTGAAGTTTCAACCTTTAACAAAATAATCAAAAGGAAAGCAAAAACCATATTCATTTTCAGATTAATCCCACATTTCTTCTTCAAAATCCTCAAAGATTCATTGGTCCTTTTCACTGTATTATTGTCTAAAGCAAGATGGCTGTTTCTACTCCCA...

CDS

4 records

下载 CDS FASTA

LOC130988871
ATGTTTGGGAAAGAAGAAGAACGAGGGACGGAGGTGACTGGCGCGGCGGAGCCAGAGCAGAGCTGCTCTCGGCCAGAGCAGAGCAGAGCAGAGCCACGTAGGCGCCATGTCAGCTCGGTATTGCCACGTAGGGGCCATGTCAGCTCGATAATGCCACGTAGGCGCCACCTAAGACCGGACAGTCACCGGAGCACATGCGCCAAGAACGTAGTCTGCTTAATCGGGAACGTGCGGAGACAGACGATTGTCCGTGTTTCTGA...

LOC130988871
ATGGCTGTTTCTACTCCCATCAGCACATGCGCCAAGAACGTAGTCTGCTTAATCGGGAACGTGCGGAGACAGACGATTGTCCGTGTTTCTGATGCGTTCCAACACTCATCGTGCTGTTGCTGCACCTTCAACAAACATGGCAGACTAAATTATTTCACCACCAATGCAAAGTCTAATAGCTTTCAAGCATTTAAGGGCGACTCTTTTGGATGCCATTCGCTCACATTTAAAGGTCTCGTTGGTCCTAGACGTTATGGGAA...

Protein

4 records

下载 Protein FASTA

XP_057768819.1
MFGKEEERGTEVTGAAEPEQSCSRPEQSRAEPRRRHVSSVLPRRGHVSSIMPRRRHLRPDSHRSTCAKNVVCLIGNVRRQTIVRVSDAFQHSSCCCCTFNKHGRLNYFTTNAKSNSFQAFKGDSFGCHSLTFKGLVGPRRYGKVHVNVGYEDTNLRLLMGRRNRASKVKCSVGPFSFRQRGVSAGFLIGLMVCFSTAQPSYAESPEGNETRGNSSSSNSNNKKVLADYCVIGIPGDGRCLFRSVAHGACIRLGNPAPNED...

XP_057768821.1
MAVSTPISTCAKNVVCLIGNVRRQTIVRVSDAFQHSSCCCCTFNKHGRLNYFTTNAKSNSFQAFKGDSFGCHSLTFKGLVGPRRYGKVHVNVGYEDTNLRLLMGRRNRASKVKCSVGPFSFRQRGVSAGFLIGLMVCFSTAQPSYAESPEGNETRGNSSSSNSNNKKVLADYCVIGIPGDGRCLFRSVAHGACIRLGNPAPNEDAQRELADELRARVADEFIKRREETEWFIEGDFDKYISQIRKPHVWGGEPELLMASH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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