当前解析结果
SmilChr06G001412| 统一新 Gene ID | SmilChr06G001412 |
|---|---|
| 名称 | SmilChr06G001412 |
| 描述 | uncharacterized SmilChr06G001412 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 14815056 - 14815812 / + |
| NCBI Gene ID | LOC130990542 |
|---|---|
| GeneID | 130990542 |
| locus_tag | - |
| NCBI Name | LOC130990542 |
| 原始查询 | SmilChr06G001412 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0597300; species=rice; confidence=low |
| 产物 | hit=Os12g0597300; species=rice; confidence=low |
| Arabidopsis | AT3G05850 (MUG7)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859] identity=29.5; qcov=0.922; evalue=2.92e-25; confidence=low |
| Rice | Os12g0597300- identity=30.6; qcov=0.949; evalue=1.93e-25; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990542 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057770752.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057770752.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057770752.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057770752.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057770752.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:14815062 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | A25 |
Chr6:14815062 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A25 |
Chr6:14815066 |
GC |
G |
1bp_deletion | frameshift_variant | 14 | A15,A8,B103,B24,B25,B33,B79,C4,C57,C58,C6,C78,D5,D9 |
Chr6:14815071 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A2,B18 |
Chr6:14815084 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B119,B48 |
Chr6:14815101 |
C |
T |
EMS_canonical_SNV | stop_gained | 27 | B110,B117,B132,B140,B2,B20,B29,B3,B32,B4,B58,B79,B80,B94,C13,C14,C15,C23,C26,C30,C45,C60,C62,C63,C67,C74,C82 |
Chr6:14815118 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C32,C37 |
Chr6:14815152 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B112,C79 |
Chr6:14815164 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A2,B18,B64 |
Chr6:14815212 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B41,B44,B78,B91 |
Chr6:14815214 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B12,B126,C19,D3 |
Chr6:14815216 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B42,C1 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。