当前解析结果
SmilChr06G001446| 统一新 Gene ID | SmilChr06G001446 |
|---|---|
| 名称 | SmilChr06G001446 |
| 描述 | uncharacterized SmilChr06G001446 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 15271290 - 15274894 / + |
| NCBI Gene ID | LOC130990133 |
|---|---|
| GeneID | 130990133 |
| locus_tag | - |
| NCBI Name | LOC130990133 |
| 原始查询 | SmilChr06G001446 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cardiomyopathy-associated protein [Source:NCBI gene (formerly Entrezgene);Acc:831659]; symbol=AT5G17910; hit=AT5G17910; species=arabidopsis; confidence=medium |
| 产物 | cardiomyopathy-associated protein [Source:NCBI gene (formerly Entrezgene);Acc:831659]; symbol=AT5G17910; hit=AT5G17910; species=arabidopsis; confidence=medium |
| Arabidopsis | AT5G17910 (AT5G17910)cardiomyopathy-associated protein [Source:NCBI gene (formerly Entrezgene);Acc:831659] identity=41.5; qcov=0.484; evalue=3.77e-45; confidence=medium |
| Rice | Os01g0812050- identity=37.4; qcov=0.506; evalue=1.84e-32; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990133 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.80000 | XP_057770316.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.40000 | XP_057770316.1 |
| 3 | Nucleus membrane | 核膜 | 0.20000 | XP_057770316.1 |
| 4 | Cell membrane | 细胞膜 | 0.20000 | XP_057770316.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057770316.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:15273139 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C30 |
Chr6:15273238 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B26 |
Chr6:15273238 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B26 |
Chr6:15273298 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B114,B28,B90,B92 |
Chr6:15273390 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
Chr6:15273436 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A20,B16,B47,C42,D11 |
Chr6:15273797 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A20 |
Chr6:15274045 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B26,B30,B72 |
Chr6:15274055 |
C |
CTG |
2bp_insertion | frameshift_variant | 4 | A20,B20,C64,D11 |
Chr6:15274055 |
C |
CTG |
2bp_insertion | CDS_variant | 4 | A20,B20,C64,D11 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。