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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G001452

染色体: Chr06 坐标: 15360877-15365172 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G001452
名称SmilChr06G001452
描述calcium-dependent protein kinase 32-like
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向15360877 - 15365172 / +

ID 对照

NCBI Gene IDLOC130990140
GeneID130990140
locus_tag-
NCBI NameLOC130990140
原始查询SmilChr06G001452

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述calcium-dependent protein kinase 32-like
产物calcium-dependent protein kinase 32-like
ArabidopsisAT3G57530 (CPK32)
calcium-dependent protein kinase 32 [Source:NCBI gene (formerly Entrezgene);Acc:824920]
identity=73.8; qcov=1.03; evalue=0; confidence=high
RiceOs07g0568600 (OsCDPK20)
-
identity=70.9; qcov=1.04; evalue=0; confidence=high
GOGO:0004683 (calcium/calmodulin-dependent protein kinase activity); GO:0005509 (calcium ion binding); GO:0005516 (calmodulin binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0009931 (calcium-dependent protein serine/threonine kinase activity); GO:0018105 (peptidyl-serine phosphorylation); GO:0035556 (intracellular signal transduction); GO:0046777 (protein autophosphorylation)
KEGGsmil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
PfamPF00036 (EF-hand_1); PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF13202 (EF-hand_5); PF13405 (EF-hand_6); PF13499 (EF-hand_7); PF13833 (EF-hand_8)
InterPro-
eggNOG-
NRGeneID:130990140

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057770323.1
2 Cytosol 细胞质基质 0.80000 XP_057770323.1
3 Cytoplasm 细胞质 0.20000 XP_057770323.1
4 Nucleus 细胞核 0.00000 XP_057770323.1
5 Chromosome 染色体 0.00000 XP_057770323.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:15361591 AC A 1bp_deletion frameshift_variant 1 C73
Chr6:15361591 AC A 1bp_deletion CDS_variant 1 C73
Chr6:15361594 G A EMS_canonical_SNV CDS_variant 1 C73
Chr6:15361753 G A EMS_canonical_SNV CDS_variant 4 A25,A5,B71,C83
Chr6:15361766 GAT G 2bp_deletion frameshift_variant 2 A25,A5
Chr6:15361766 GAT G 2bp_deletion CDS_variant 2 A25,A5
Chr6:15361783 G A EMS_canonical_SNV CDS_variant 2 A25,A5
Chr6:15361787 CTT C 2bp_deletion frameshift_variant 2 A25,A5
Chr6:15361787 CTT C 2bp_deletion CDS_variant 2 A25,A5
Chr6:15361798 G A EMS_canonical_SNV CDS_variant 2 A25,A5
Chr6:15361882 G A EMS_canonical_SNV CDS_variant 3 B1,B82,C17
Chr6:15362667 C T EMS_canonical_SNV CDS_variant 2 B14,C75

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770323.1
523 aa
N
1
262
523
Pkinase
PK_Tyr_Ser-Thr
EF-hand_7
EF-hand_8
EF-hand_7
EF-hand_5
EF-hand_6
EF-hand_1
EF-hand_8
EF-hand_1
EF-hand_5
C
PF00069 Pkinase 47-305 aa PF07714 PK_Tyr_Ser-Thr 48-300 aa PF13499 EF-hand_7 353-411 aa PF13833 EF-hand_8 365-415 aa PF13499 EF-hand_7 422-486 aa PF13202 EF-hand_5 425-447 aa PF13405 EF-hand_6 425-449 aa PF00036 EF-hand_1 425-450 aa PF13833 EF-hand_8 456-486 aa PF00036 EF-hand_1 461-487 aa PF13202 EF-hand_5 462-485 aa
XP_057770324.1
523 aa
N
1
262
523
Pkinase
PK_Tyr_Ser-Thr
EF-hand_7
EF-hand_8
EF-hand_7
EF-hand_5
EF-hand_6
EF-hand_1
EF-hand_8
EF-hand_1
EF-hand_5
C
PF00069 Pkinase 47-305 aa PF07714 PK_Tyr_Ser-Thr 48-300 aa PF13499 EF-hand_7 353-411 aa PF13833 EF-hand_8 365-415 aa PF13499 EF-hand_7 422-486 aa PF13202 EF-hand_5 425-447 aa PF13405 EF-hand_6 425-449 aa PF00036 EF-hand_1 425-450 aa PF13833 EF-hand_8 456-486 aa PF00036 EF-hand_1 461-487 aa PF13202 EF-hand_5 462-485 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057770323.1 Pfam PF00069 Pkinase Domain 47 305 3.6e-81 273.1 Protein kinase domain
XP_057770323.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 48 300 1.1e-28 101.0 Protein tyrosine and serine/threonine kinase
XP_057770323.1 Pfam PF13499 EF-hand_7 Domain 353 411 7.2e-29 100.7 EF-hand domain pair
XP_057770323.1 Pfam PF13833 EF-hand_8 Domain 365 415 5e-15 55.7 EF-hand domain pair
XP_057770323.1 Pfam PF13499 EF-hand_7 Domain 422 486 7.2e-29 100.7 EF-hand domain pair
XP_057770323.1 Pfam PF13202 EF-hand_5 Domain 425 447 1.1e-15 56.9 EF hand
XP_057770323.1 Pfam PF13405 EF-hand_6 Domain 425 449 2.4e-22 77.2 EF-hand domain
XP_057770323.1 Pfam PF00036 EF-hand_1 Domain 425 450 2.8e-25 86.7 EF hand domain
XP_057770323.1 Pfam PF13833 EF-hand_8 Domain 456 486 5e-15 55.7 EF-hand domain pair
XP_057770323.1 Pfam PF00036 EF-hand_1 Domain 461 487 2.8e-25 86.7 EF hand domain
XP_057770323.1 Pfam PF13202 EF-hand_5 Domain 462 485 1.1e-15 56.9 EF hand
XP_057770324.1 Pfam PF00069 Pkinase Domain 47 305 3.6e-81 273.1 Protein kinase domain
XP_057770324.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 48 300 1.1e-28 101.0 Protein tyrosine and serine/threonine kinase
XP_057770324.1 Pfam PF13499 EF-hand_7 Domain 353 411 7.2e-29 100.7 EF-hand domain pair
XP_057770324.1 Pfam PF13833 EF-hand_8 Domain 365 415 5e-15 55.7 EF-hand domain pair
XP_057770324.1 Pfam PF13499 EF-hand_7 Domain 422 486 7.2e-29 100.7 EF-hand domain pair
XP_057770324.1 Pfam PF13202 EF-hand_5 Domain 425 447 1.1e-15 56.9 EF hand
XP_057770324.1 Pfam PF13405 EF-hand_6 Domain 425 449 2.4e-22 77.2 EF-hand domain
XP_057770324.1 Pfam PF00036 EF-hand_1 Domain 425 450 2.8e-25 86.7 EF hand domain
XP_057770324.1 Pfam PF13833 EF-hand_8 Domain 456 486 5e-15 55.7 EF-hand domain pair
XP_057770324.1 Pfam PF00036 EF-hand_1 Domain 461 487 2.8e-25 86.7 EF hand domain
XP_057770324.1 Pfam PF13202 EF-hand_5 Domain 462 485 1.1e-15 56.9 EF hand

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057914341.1
CTTAATAAGTCCAATACGAAATATCTAGCATAAGTTGAGGATATTTTAATAGAAGAATTCCTAATATGATTTATAATAAACTAAATTAGTTGACAAAAAAAGAAAATAGAAAAGAAATGAATTAGATAGGCGGAGTAGGAGGAAAGTGTATATGAAATCTCTTTGACTCTCTAAATCAGCAGCTCATATGTTGAAATTCCGCACTCCCAATTTCAGCATTTCTTCAATCTCGCTTTCCCAACCCTCTCAAAAATCCCCCA...
XM_057914340.1
AGAAATGAATTAGATAGGCGGAGTAGGAGGAAAGTGTATATGAAATCTCTTTGACTCTCTAAATCAGCAGCTCATATGTTGAAATTCCGCACTCCCAATTTCAGCATTTCTTCAATCTCGCTTTCCCAACCCTCTCAAAAATCCCCCAAATCGGACCCCCCACCGTCCTACCACTCATAGAAATCCATTTTATCTTTTGTAGATTCAAAATTTCCTTTTCTTGGTTTGAGAATCCCTCCATTTCTAGATTGCATCAGGTG...

CDS

2 records

下载 CDS FASTA
LOC130990140
ATGGGTAATTGTTGTGCAGTACCGCAAACTTCTGATGAGCAGAAGCCAAACCCTTACTTCGATGGGAAACCTGTTCCAAATGGTGGGCTTAAATCTTATGTGTTGGAGAATCCAACAGGGCTTAACATAGAGGAGTTTTATGAGCTGGGGCGGGAGCTCGGGCGGGGTGAATTTGGGATCACGTATATGTGTACTGATAAAAGCAGTGGAGAGATTCTTGCTTGTAAGTCTATATCAAAGAAGAAGCTGAGGACTAGAGT...
LOC130990140
ATGGGTAATTGTTGTGCAGTACCGCAAACTTCTGATGAGCAGAAGCCAAACCCTTACTTCGATGGGAAACCTGTTCCAAATGGTGGGCTTAAATCTTATGTGTTGGAGAATCCAACAGGGCTTAACATAGAGGAGTTTTATGAGCTGGGGCGGGAGCTCGGGCGGGGTGAATTTGGGATCACGTATATGTGTACTGATAAAAGCAGTGGAGAGATTCTTGCTTGTAAGTCTATATCAAAGAAGAAGCTGAGGACTAGAGT...

Protein

2 records

下载 Protein FASTA
XP_057770323.1
MGNCCAVPQTSDEQKPNPYFDGKPVPNGGLKSYVLENPTGLNIEEFYELGRELGRGEFGITYMCTDKSSGEILACKSISKKKLRTRVDIEDVKREVEIMKHLPKHPNIVTLKDTYEDDSAVHLVMELCEGGELFDRIVARGHYTERAAAAVTRTIVEVIQNCHKHGVIHRDLKPENFLFSNKKETAPLKAIDFGLSVFFKPGQTFDEIVGSPYYMAPEVLKRNYGPEIDVWSAGVILYILLCGVPPFWAETEQGVAQAII...
XP_057770324.1
MGNCCAVPQTSDEQKPNPYFDGKPVPNGGLKSYVLENPTGLNIEEFYELGRELGRGEFGITYMCTDKSSGEILACKSISKKKLRTRVDIEDVKREVEIMKHLPKHPNIVTLKDTYEDDSAVHLVMELCEGGELFDRIVARGHYTERAAAAVTRTIVEVIQNCHKHGVIHRDLKPENFLFSNKKETAPLKAIDFGLSVFFKPGQTFDEIVGSPYYMAPEVLKRNYGPEIDVWSAGVILYILLCGVPPFWAETEQGVAQAII...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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