当前解析结果
SmilChr06G001455| 统一新 Gene ID | SmilChr06G001455 |
|---|---|
| 名称 | SmilChr06G001455 |
| 描述 | probable galactinol--sucrose galactosyltransferase 2 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 15397821 - 15401897 / + |
| NCBI Gene ID | LOC130990142 |
|---|---|
| GeneID | 130990142 |
| locus_tag | - |
| NCBI Name | LOC130990142 |
| 原始查询 | SmilChr06G001455 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable galactinol--sucrose galactosyltransferase 2 |
| 产物 | probable galactinol--sucrose galactosyltransferase 2 |
| Arabidopsis | AT3G57520 (SIP2)seed imbibition 2 [Source:NCBI gene (formerly Entrezgene);Acc:824919] identity=73.9; qcov=1.02; evalue=0; confidence=high |
| Rice | Os07g0209100- identity=67.2; qcov=1.02; evalue=0; confidence=high |
| GO | GO:0052692 (raffinose alpha-galactosidase activity) |
| KEGG | smil00052 (Galactose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF05691 (Raffinose_syn) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990142 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057770328.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057770328.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057770328.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057770328.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057770328.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:15399002 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,B59,D2 |
Chr6:15399205 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | B82 |
Chr6:15399205 |
AT |
A |
1bp_deletion | CDS_variant | 1 | B82 |
Chr6:15399254 |
GAC |
G |
2bp_deletion | frameshift_variant | 77 | A16,A2,A21,A23,A25,A3,A6,B10,B103,B106,B107,B11,B111,B112,B113,B114,B115,B117,B122,B123,B129,B130,B131,B139,B17,B24,B26,B32,B33,B39,B4,B42,B44,B45,B49,B51,B56,B58,B61,B72,B73,B77,B80,B81,B82,B84,B91,C10,C11,C12,C13,C15,C16,C17,C2,C21,C22,C27,C29,C30,C31,C32,C38,C44,C47,C5,C55,C56,C62,C65,C70,C71,C75,C76,C8,D6,D8 |
Chr6:15399257 |
C |
CTT |
2bp_insertion | frameshift_variant | 77 | A16,A2,A21,A23,A25,A3,A6,B10,B103,B106,B107,B11,B111,B112,B113,B114,B115,B117,B122,B123,B129,B130,B131,B139,B17,B24,B26,B32,B33,B39,B4,B42,B44,B45,B49,B51,B56,B58,B61,B72,B73,B77,B80,B81,B82,B84,B91,C10,C11,C12,C13,C15,C16,C17,C2,C21,C22,C27,C29,C30,C31,C32,C38,C44,C47,C5,C55,C56,C62,C65,C70,C71,C75,C76,C8,D6,D8 |
Chr6:15399594 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B113 |
Chr6:15399927 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C37,C47 |
Chr6:15399933 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C37,C47,D11 |
Chr6:15400144 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:15400207 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C27,D4 |
Chr6:15400448 |
GT |
G |
1bp_deletion | frameshift_variant | 259 | A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B33,B34,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9 |
Chr6:15400451 |
TCA |
T |
2bp_deletion | frameshift_variant | 259 | A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B33,B34,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770328.1PF05691
Raffinose_syn 9-745 aa
XP_057770329.1PF05691
Raffinose_syn 9-745 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770328.1 |
Pfam | PF05691 |
Raffinose_syn | Family | 9 | 745 | 0 | 1116.6 | Raffinose synthase or seed imbibition protein Sip1 |
XP_057770329.1 |
Pfam | PF05691 |
Raffinose_syn | Family | 9 | 745 | 0 | 1116.6 | Raffinose synthase or seed imbibition protein Sip1 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。