当前解析结果
SmilChr06G001462| 统一新 Gene ID | SmilChr06G001462 |
|---|---|
| 名称 | SmilChr06G001462 |
| 描述 | uncharacterized SmilChr06G001462 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 15487956 - 15489260 / + |
| NCBI Gene ID | LOC130990559 |
|---|---|
| GeneID | 130990559 |
| locus_tag | - |
| NCBI Name | LOC130990559 |
| 原始查询 | SmilChr06G001462 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0484800; species=rice; confidence=low |
| 产物 | hit=Os06g0484800; species=rice; confidence=low |
| Arabidopsis | AT1G43760 (AT1G43760)DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968] identity=28.3; qcov=0.929; evalue=2.78e-42; confidence=low |
| Rice | Os06g0484800- identity=28.7; qcov=1; evalue=1.05e-48; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990559 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057770764.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057770764.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057770764.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057770764.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057770764.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:15487964 |
C |
CT |
1bp_insertion | stop_gained,frameshift_variant | 14 | B114,B12,B125,B139,B19,B38,B39,B48,B63,B97,C20,C28,C39,C56 |
Chr6:15487972 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr6:15487974 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr6:15488019 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C27,D10,D4 |
Chr6:15488023 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A24,C86 |
Chr6:15488028 |
C |
T |
EMS_canonical_SNV | stop_gained | 3 | B64,B90,B92 |
Chr6:15488028 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B64,B90,B92 |
Chr6:15488030 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B101,B2,B30,B72,B93 |
Chr6:15488072 |
TC |
T |
1bp_deletion | frameshift_variant | 6 | B101,B2,B26,B30,B72,B93 |
Chr6:15488077 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B28,C14 |
Chr6:15488079 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A24,C86 |
Chr6:15488122 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B28,C14 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。