当前解析结果
SmilChr06G001470| 统一新 Gene ID | SmilChr06G001470 |
|---|---|
| 名称 | SmilChr06G001470 |
| 描述 | RING-H2 finger protein ATL79-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 15591930 - 15592409 / + |
| NCBI Gene ID | LOC130990561 |
|---|---|
| GeneID | 130990561 |
| locus_tag | - |
| NCBI Name | LOC130990561 |
| 原始查询 | SmilChr06G001470 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | RING-H2 finger protein ATL79-like |
| 产物 | RING-H2 finger protein ATL79-like |
| Arabidopsis | AT4G17245 (AT4G17245)RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827437] identity=48.4; qcov=0.805; evalue=5.71e-35; confidence=medium |
| Rice | Os04g0419550- identity=39.7; qcov=0.824; evalue=2.2e-25; confidence=medium |
| GO | GO:0016567 (protein ubiquitination); GO:0016740 (transferase activity) |
| KEGG | - |
| Pfam | PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF17123 (zf-RING_11) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990561 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057770767.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057770767.1 |
| 3 | Vacuole | 液泡 | 0.20000 | XP_057770767.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057770767.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057770767.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:15592039 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr6:15592083 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C21 |
Chr6:15592174 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B34,C85,D5 |
Chr6:15592197 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B87 |
Chr6:15592197 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B87 |
Chr6:15592253 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C5,C82 |
Chr6:15592282 |
C |
CG |
1bp_insertion | frameshift_variant | 5 | A20,B45,B89,C10,C72 |
Chr6:15592282 |
C |
CG |
1bp_insertion | CDS_variant | 5 | A20,B45,B89,C10,C72 |
Chr6:15592317 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B64,B90,B92 |
Chr6:15592403 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770767.1PF17123
zf-RING_11 112-141 aa
PF13923
zf-C3HC4_2 112-154 aa
PF13639
zf-RING_2 112-155 aa
PF13445
zf-RING_UBOX 113-152 aa
PF00097
zf-C3HC4 113-154 aa
PF12678
zf-rbx1 126-155 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770767.1 |
Pfam | PF17123 |
zf-RING_11 | Domain | 112 | 141 | 6e-11 | 42.6 | RING-like zinc finger |
XP_057770767.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 112 | 154 | 2.6e-08 | 34.3 | Zinc finger, C3HC4 type (RING finger) |
XP_057770767.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 112 | 155 | 3.7e-14 | 53.4 | Ring finger domain |
XP_057770767.1 |
Pfam | PF13445 |
zf-RING_UBOX | Domain | 113 | 152 | 2e-05 | 25.2 | RING-type zinc-finger |
XP_057770767.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 113 | 154 | 6.9e-06 | 26.5 | Zinc finger, C3HC4 type (RING finger) |
XP_057770767.1 |
Pfam | PF12678 |
zf-rbx1 | Domain | 126 | 155 | 8.4e-08 | 33.1 | RING-H2 zinc finger domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。