Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001471`

染色体: Chr06 坐标: 15605858-15613303 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001471`
名称	SmilChr06G001471
描述	villin-2-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	15605858 - 15613303 / `+`

ID 对照

NCBI Gene ID	`LOC130990155`
GeneID	`130990155`
locus_tag	`-`
NCBI Name	`LOC130990155`
原始查询	`SmilChr06G001471`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	villin-2-like
产物	villin-2-like
Arabidopsis	`AT2G41740` (VLN2) villin 2 [Source:NCBI gene (formerly Entrezgene);Acc:818773] identity=64; qcov=1.04; evalue=0; confidence=high
Rice	`Os03g0356700` (VLN2) - identity=62.1; qcov=1.04; evalue=0; confidence=high
GO	GO:0007010 (cytoskeleton organization); GO:0051014 (actin filament severing); GO:0051015 (actin filament binding)
KEGG	-
Pfam	PF00626 (Gelsolin); PF02209 (VHP)
InterPro	-
eggNOG	-
NR	GeneID:130990155

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoskeleton	细胞骨架	1.00000	`XP_057770352.1`
2	Cell projection	细胞突起	1.00000	`XP_057770352.1`
3	Pseudopodium	Pseudopodium	1.00000	`XP_057770352.1`
4	Ruffle	Ruffle	0.80000	`XP_057770352.1`
5	Cytosol	细胞质基质	0.60000	`XP_057770352.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:15607849`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B62,C1
`Chr6:15607886`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B80,B88
`Chr6:15608386`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C46
`Chr6:15608777`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr6:15609060`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr6:15609408`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B13,B44,B75
`Chr6:15609443`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr6:15609691`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr6:15609951`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr6:15609972`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B64,B90,B92
`Chr6:15610650`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr6:15611014`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A24,C86

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770352.1

947 aa

474

947

Gelsolin

VHP

PF00626 Gelsolin 29-111 aa PF00626 Gelsolin 150-217 aa PF00626 Gelsolin 265-337 aa PF00626 Gelsolin 408-485 aa PF00626 Gelsolin 534-602 aa PF02209 VHP 912-947 aa

XP_057770353.1

947 aa

474

947

Gelsolin

VHP

PF00626 Gelsolin 29-111 aa PF00626 Gelsolin 150-217 aa PF00626 Gelsolin 265-337 aa PF00626 Gelsolin 408-485 aa PF00626 Gelsolin 534-602 aa PF02209 VHP 912-947 aa

XP_057770354.1

947 aa

474

947

Gelsolin

VHP

PF00626 Gelsolin 29-111 aa PF00626 Gelsolin 150-217 aa PF00626 Gelsolin 265-337 aa PF00626 Gelsolin 408-485 aa PF00626 Gelsolin 534-602 aa PF02209 VHP 912-947 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770352.1`	Pfam	`PF00626`	Gelsolin	Domain	29	111	6.3e-74	244.5	Gelsolin repeat
`XP_057770352.1`	Pfam	`PF00626`	Gelsolin	Domain	150	217	6.3e-74	244.5	Gelsolin repeat
`XP_057770352.1`	Pfam	`PF00626`	Gelsolin	Domain	265	337	6.3e-74	244.5	Gelsolin repeat
`XP_057770352.1`	Pfam	`PF00626`	Gelsolin	Domain	408	485	6.3e-74	244.5	Gelsolin repeat
`XP_057770352.1`	Pfam	`PF00626`	Gelsolin	Domain	534	602	6.3e-74	244.5	Gelsolin repeat
`XP_057770352.1`	Pfam	`PF02209`	VHP	Domain	912	947	2.8e-16	59.9	Villin headpiece domain
`XP_057770353.1`	Pfam	`PF00626`	Gelsolin	Domain	29	111	6.3e-74	244.5	Gelsolin repeat
`XP_057770353.1`	Pfam	`PF00626`	Gelsolin	Domain	150	217	6.3e-74	244.5	Gelsolin repeat
`XP_057770353.1`	Pfam	`PF00626`	Gelsolin	Domain	265	337	6.3e-74	244.5	Gelsolin repeat
`XP_057770353.1`	Pfam	`PF00626`	Gelsolin	Domain	408	485	6.3e-74	244.5	Gelsolin repeat
`XP_057770353.1`	Pfam	`PF00626`	Gelsolin	Domain	534	602	6.3e-74	244.5	Gelsolin repeat
`XP_057770353.1`	Pfam	`PF02209`	VHP	Domain	912	947	2.8e-16	59.9	Villin headpiece domain
`XP_057770354.1`	Pfam	`PF00626`	Gelsolin	Domain	29	111	6.3e-74	244.5	Gelsolin repeat
`XP_057770354.1`	Pfam	`PF00626`	Gelsolin	Domain	150	217	6.3e-74	244.5	Gelsolin repeat
`XP_057770354.1`	Pfam	`PF00626`	Gelsolin	Domain	265	337	6.3e-74	244.5	Gelsolin repeat
`XP_057770354.1`	Pfam	`PF00626`	Gelsolin	Domain	408	485	6.3e-74	244.5	Gelsolin repeat
`XP_057770354.1`	Pfam	`PF00626`	Gelsolin	Domain	534	602	6.3e-74	244.5	Gelsolin repeat
`XP_057770354.1`	Pfam	`PF02209`	VHP	Domain	912	947	2.8e-16	59.9	Villin headpiece domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057914369.1
TTAAAGAAAAATAAAAAGGCGAAAAAGGAGGCCCATAAAAAGAAGAAAAGCCAACATGGCTGGTGCTGCCACCATCACCGGATCTTTGCTCAGCTCTCTCTCATTCACCTTCTTTCTCTCTCAACGTTTCTCTCTCTATATTTATCACTTCTTCGATTTTCTCGTCTATCTCTCCTCCTCCATTGTTGCCCAAACGCTGTCTGAAAAAAAAAAAGGCCATTGTAGAAAATCTTCATCAAATCTCAGGAATCGTCCTAGAA...

XM_057914370.1
GAAAAGCCAACATGGCTGGTGCTGCCACCATCACCGGATCTTTGCTCAGCTCTCTCTCATTCACCTTCTTTCTCTCTCAACGTTTCTCTCTCTATATTTATCACTTCTTCGATTTTCTCGTCTATCTCTCCTCCTCCATTGTTGCCCAAACGCTGTCTGAAAAAAAAAAAGGCCATTGTAGAAAATCTTCATCAAATCTCAGGAATCGTCCTAGAAATTTTGATCATAAACAGAGATGCAATGGAAGAAACGCCCGTGTA...

CDS

3 records

下载 CDS FASTA

LOC130990155
ATGTCTAACGCAGCAAAATCTCTGGAACCTGCTTTTCAGGGAGTTGGTCAGAAAGCAGGGCTTGAGATATGGAGAATTGAGAACTTCCAACCAGTTCCCTTGCCAAAACCTGATTATGGTAAATTCTACTCCGGAGATTCATATATCGTTCTACAGACAATTGCTGGAAGAGGAGGCGGTTATCATTATGATGTACACTTCTGGCTCGGAAAGGATACTAGCCAAGACGAAGCAGGGACTGCAGCTATCAAAACTGTCGA...

Protein

3 records

下载 Protein FASTA

XP_057770352.1
MSNAAKSLEPAFQGVGQKAGLEIWRIENFQPVPLPKPDYGKFYSGDSYIVLQTIAGRGGGYHYDVHFWLGKDTSQDEAGTAAIKTVELDAVLGGRAVQYRELQGHESDKFLSYFKPCIIPLEGGVASGFKTPEEEEFETRLYICKGKRVVRLKQVPFSRSSLNHDDIFILDTENKIYQFNGANSNIQERGKALEVVQFLKDKYHEGTCDVAIVDDGKLKAESDSGEFWVLFGGFAPIGKKVITDDDVVAEKTSPQLYSIK...

XP_057770353.1
MSNAAKSLEPAFQGVGQKAGLEIWRIENFQPVPLPKPDYGKFYSGDSYIVLQTIAGRGGGYHYDVHFWLGKDTSQDEAGTAAIKTVELDAVLGGRAVQYRELQGHESDKFLSYFKPCIIPLEGGVASGFKTPEEEEFETRLYICKGKRVVRLKQVPFSRSSLNHDDIFILDTENKIYQFNGANSNIQERGKALEVVQFLKDKYHEGTCDVAIVDDGKLKAESDSGEFWVLFGGFAPIGKKVITDDDVVAEKTSPQLYSIK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器